DNATCO v4.1: results

Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1j1u_B_C501_C502	AAA	AA00	86	0.14	AA00
02	1j1u_B_C502_G503	AAA	AA00	70	0.15	AA00
03	1j1u_B_G503_G504	AAA	AA00	78	0.17	AA00
04	1j1u_B_G504_C505	AAA	AA00	67	0.23	AA00
05	1j1u_B_C505_G506	AAA	AA08	70	0.24	AA08
06	1j1u_B_G506_G507	A-B	AB05	56	0.31	AB05
07	1j1u_B_G507_U508	OPN	OP11	63	0.45	OP11
08	1j1u_B_U508_A509	NAN	NANT	0	0.47	IC07
09	1j1u_B_A509_G510	NAN	NANT	0	1.24	OP12
10	1j1u_B_G510_U511	AAA	AA00	56	0.23	AA00
11	1j1u_B_U511_U512	AAA	AA00	74	0.19	AA00
12	1j1u_B_U512_C513	AAw	AA01	72	0.18	AA01
13	1j1u_B_C513_A514	AAA	AA00	41	0.41	AA00
14	1j1u_B_A514_G515	AAw	AA05	44	0.43	AA05
15	1j1u_B_G515_C516	NAN	NANT	0	0.47	IC06
16	1j1u_B_C516_C517	OPN	OP12	61	0.29	OP12
17	1j1u_B_C517_U518	NAN	NANT	0	0.23	ZZ01
18	1j1u_B_U518_G519	NAN	NANT	0	0.81	OP29
19	1j1u_B_G519_G520	NAN	NANT	0	0.52	IC06
20	1j1u_B_G520_U521	NAN	NANT	0	1.15	ZZ02
21	1j1u_B_U521_A522	NAN	NANT	0	1.84	IC03
22	1j1u_B_A522_G523	NAN	NANT	0	0.98	AA01
23	1j1u_B_G523_A524	AAA	AA00	61	0.26	AA00
24	1j1u_B_A524_A525	AAA	AA00	53	0.26	AA00
25	1j1u_B_A525_C526	AAA	AA08	91	0.20	AA08
26	1j1u_B_C526_G527	AAA	AA08	71	0.31	AA08
27	1j1u_B_G527_G528	AAA	AA08	76	0.28	AA08
28	1j1u_B_G528_C529	AAA	AA00	93	0.11	AA00
29	1j1u_B_C529_G530	AAA	AA00	88	0.26	AA00
30	1j1u_B_G530_G531	AAw	AA06	84	0.25	AA06
31	1j1u_B_G531_A532	AAA	AA04	28	0.51	AA04
32	1j1u_B_A532_C533	AAA	AA00	66	0.22	AA00
33	1j1u_B_C533_U534	NAN	NANT	0	0.88	AA11
34	1j1u_B_U534_G535	NAN	NANT	0	1.10	OP17
35	1j1u_B_G535_U536	NAN	NANT	0	1.48	AB02
36	1j1u_B_U536_A537	AAA	AA00	71	0.28	AA00
37	1j1u_B_A537_G538	AAA	AA04	41	0.45	AA04
38	1j1u_B_G538_A539	AAA	AA00	75	0.28	AA00
39	1j1u_B_A539_U540	AAA	AA00	52	0.42	AA00
40	1j1u_B_U540_C541	AAw	AA06	84	0.23	AA06
41	1j1u_B_C541_C542	AAA	AA08	77	0.29	AA08
42	1j1u_B_C542_G543	AAA	AA00	73	0.21	AA00
43	1j1u_B_G543_C544	AAA	AA03	81	0.24	AA03
44	1j1u_B_C544_A545	AAA	AA00	92	0.13	AA00
45	1j1u_B_A545_U546	NAN	NANT	0	0.77	AA10
46	1j1u_B_U546_G547	NAN	NANT	0	0.81	IC06
47	1j1u_B_G547_U548	NAN	NANT	0	2.03	OP18
48	1j1u_B_U548_C549	NAN	NANT	0	1.66	OP17
49	1j1u_B_C549_G550	NAN	NANT	0	1.32	OP05
50	1j1u_B_G550_C551	AAA	AA00	69	0.16	AA00
51	1j1u_B_C551_U552	AAA	AA00	83	0.24	AA00
52	1j1u_B_U552_G553	AAw	AA01	79	0.41	AA01
53	1j1u_B_G553_G554	AAA	AA08	33	0.35	AA08
54	1j1u_B_G554_U555	AAA	AA00	79	0.23	AA00
55	1j1u_B_U555_U556	AAA	AA00	65	0.37	AA00
56	1j1u_B_U556_C557	OPN	OP04	97	0.16	OP04
57	1j1u_B_C557_A558	AAA	AA00	77	0.32	AA00
58	1j1u_B_A558_A559	ICL	IC01	80	0.41	IC01
59	1j1u_B_A559_A560	OPN	OP25	79	0.27	OP25
60	1j1u_B_A560_U561	A-B	AB05	35	0.41	AB05
61	1j1u_B_U561_C562	OPN	OP12	85	0.10	OP12
62	1j1u_B_C562_C563	AAA	AA00	51	0.21	AA00
63	1j1u_B_C563_G564	AAA	AA00	81	0.21	AA00
64	1j1u_B_G564_G565	AAA	AA00	92	0.16	AA00
65	1j1u_B_G565_C566	AAA	AA00	80	0.18	AA00
66	1j1u_B_C566_C567	AAA	AA00	59	0.22	AA00
67	1j1u_B_C567_C568	AAA	AA00	82	0.18	AA00
68	1j1u_B_C568_G569	AAA	AA00	89	0.18	AA00
69	1j1u_B_G569_C570	AAA	AA00	78	0.11	AA00
70	1j1u_B_C570_C571	AAA	AA00	94	0.13	AA00
71	1j1u_B_C571_G572	AAA	AA00	69	0.19	AA00
72	1j1u_B_G572_G573	NAN	NANT	0	0.45	AA03
73	1j1u_B_G573_A574	NAN	NANT	0	1.37	IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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