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Conformers: ABBIImiBZICOPNSYNN
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Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011ixy_C_DG1_DA2NANNANT02.35 OP28
021ixy_C_DA2_DT3BBBBB00820.18 BB00
031ixy_C_DT3_DA4BBBBB00890.18 BB00
041ixy_C_DA4_DC5BBBBB00880.13 BB00
051ixy_C_DC5_DT6BBBBB00920.25 BB00
061ixy_C_DA8_DG9BBBBB00720.20 BB00
071ixy_C_DG9_DA10BBBBB00800.23 BB00
081ixy_C_DA10_DT11BBBBB00940.20 BB00
091ixy_C_DT11_DA12B12BB04900.19 BB04
101ixy_C_DA12_DG13BBBBB00310.30 BB00
111ixy_E_DC14_DT15BBBBB00870.18 BB00
121ixy_E_DT15_DA16BBBBB00900.17 BB00
131ixy_E_DA16_DT17BBBBB00930.16 BB00
141ixy_E_DT17_DC18BBBBB00630.28 BB00
151ixy_E_DC18_DT19BBBBB00590.31 BB00
161ixy_E_DT19_DG20BBBBB00660.24 BB00
171ixy_E_DG20_DA21NANNANT01.02 OP22
181ixy_E_DA21_DG22BB2BB07740.20 BB07
191ixy_E_DG22_DT23BBBBB00840.27 BB00
201ixy_E_DT23_DA24BBBBB00880.22 BB00
211ixy_E_DA24_DT25BBwBB02890.19 BB02
221ixy_E_DT25_DC26NANNANT01.49 BB2S
231ixy_D_DG1_DA2NANNANT02.05 OP28
241ixy_D_DA2_DT3BBBBB00260.47 BB00
251ixy_D_DT3_DA4BBBBB00880.22 BB00
261ixy_D_DA4_DC5BBBBB00720.15 BB00
271ixy_D_DC5_DT6BBBBB00970.20 BB00
281ixy_D_DA8_DG9BBBBB00890.17 BB00
291ixy_D_DG9_DA10BBBBB00780.22 BB00
301ixy_D_DA10_DT11BBBBB00860.26 BB00
311ixy_D_DT11_DA12B12BB04820.26 BB04
321ixy_D_DA12_DG13BBBBB00740.20 BB00
331ixy_F_DC14_DT15BBBBB00860.20 BB00
341ixy_F_DT15_DA16BBBBB00920.17 BB00
351ixy_F_DA16_DT17BBBBB00870.22 BB00
361ixy_F_DT17_DC18BBBBB00730.23 BB00
371ixy_F_DC18_DT19BBBBB00910.15 BB00
381ixy_F_DT19_DG20BBBBB00690.22 BB00
391ixy_F_DG20_DA21NANNANT00.99 OP22
401ixy_F_DA21_DG22BB2BB07600.28 BB07
411ixy_F_DG22_DT23BBBBB00890.23 BB00
421ixy_F_DT23_DA24BBwBB02590.31 BB02
431ixy_F_DA24_DT25BBwBB03730.30 BB03
441ixy_F_DT25_DC26NANNANT01.26 OP23

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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