DNATCO v4.1: results

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1ivs_C_G901_G902	AAw	AA01	56	0.21	AA01
002	1ivs_C_G902_G903	AAw	AA06	49	0.43	AA06
003	1ivs_C_G903_C904	AAA	AA08	81	0.19	AA08
004	1ivs_C_C904_G905	AAA	AA00	72	0.17	AA00
005	1ivs_C_G905_G906	AAA	AA00	90	0.17	AA00
006	1ivs_C_G906_C907	NAN	NANT	0	0.45	AB04
007	1ivs_C_C907_U908	NAN	NANT	0	0.60	OP11
008	1ivs_C_U908_A909	NAN	NANT	0	1.01	IC02
009	1ivs_C_A909_G910	NAN	NANT	0	1.62	OP25
010	1ivs_C_G910_C911	AAA	AA08	36	0.30	AA08
011	1ivs_C_C911_U912	AAA	AA00	85	0.15	AA00
012	1ivs_C_U912_C913	AAw	AA01	65	0.22	AA01
013	1ivs_C_C913_A914	AAw	AA01	30	0.43	AA01
014	1ivs_C_A914_G915	AAA	AA08	30	0.51	AA08
015	1ivs_C_G915_C916	NAN	NANT	0	0.90	AA03
016	1ivs_C_C916_G917	NAN	NANT	0	0.94	OP16
017	1ivs_C_G917_G918	NAN	NANT	0	1.00	BA16
018	1ivs_C_G918_A919	NAN	NANT	0	1.56	IC04
019	1ivs_C_A919_A920	NAN	NANT	0	1.24	OP17
020	1ivs_C_A920_G921	NAN	NANT	0	1.03	AA01
021	1ivs_C_G921_A922	AAA	AA00	76	0.21	AA00
022	1ivs_C_A922_G923	AAA	AA00	76	0.13	AA00
023	1ivs_C_G923_C924	AAA	AA08	90	0.14	AA08
024	1ivs_C_C924_G925	AAA	AA00	78	0.28	AA00
025	1ivs_C_G925_C926	AAA	AA00	81	0.24	AA00
026	1ivs_C_C926_U927	AAA	AA00	51	0.30	AA00
027	1ivs_C_U927_C928	AAA	AA00	90	0.15	AA00
028	1ivs_C_C928_G929	NAN	NANT	0	0.79	AA11
029	1ivs_C_G929_C930	AAw	AA01	50	0.30	AA01
030	1ivs_C_C930_C931	NAN	NANT	0	1.18	OP29
031	1ivs_C_C931_U932	NAN	NANT	0	1.38	OP06
032	1ivs_C_U932_C933	NAN	NANT	0	0.95	OP03
033	1ivs_C_C933_A934	NAN	NANT	0	1.12	OP30
034	1ivs_C_A934_C935	AAA	AA00	67	0.21	AA00
035	1ivs_C_C935_A936	NAN	NANT	0	0.58	IC02
036	1ivs_C_A936_C937	NAN	NANT	0	0.88	OP21
037	1ivs_C_C937_G938	NAN	NANT	0	1.52	OP01
038	1ivs_C_G938_C939	AAA	AA00	36	0.31	AA00
039	1ivs_C_C939_G940	AAA	AA00	90	0.10	AA00
040	1ivs_C_G940_A941	AAA	AA00	85	0.20	AA00
041	1ivs_C_A941_G942	AAw	AA10	55	0.16	AA10
042	1ivs_C_G942_A943	AAA	AA00	66	0.18	AA00
043	1ivs_C_A943_G944	AAA	AA00	29	0.45	AA00
044	1ivs_C_G944_G945	NAN	NANT	0	0.69	IC04
045	1ivs_C_G945_U946	NAN	NANT	0	0.55	OP29
046	1ivs_C_U946_C947	NAN	NANT	0	1.49	OP01
047	1ivs_C_C947_G948	NAN	NANT	0	1.42	OP05
048	1ivs_C_G948_U949	AAA	AA08	21	0.35	AA08
049	1ivs_C_U949_A950	AAA	AA00	82	0.15	AA00
050	1ivs_C_A950_G951	AAw	AA06	87	0.16	AA06
051	1ivs_C_G951_G952	AAA	AA08	80	0.16	AA08
052	1ivs_C_G952_U953	AAA	AA00	66	0.22	AA00
053	1ivs_C_U953_U954	AAA	AA00	72	0.27	AA00
054	1ivs_C_U954_C955	OPN	OP04	75	0.28	OP04
055	1ivs_C_C955_A956	AAA	AA00	33	0.46	AA00
056	1ivs_C_A956_A957	NAN	NANT	0	0.73	AB04
057	1ivs_C_A957_G958	NAN	NANT	0	1.35	OP18
058	1ivs_C_G958_U959	NAN	NANT	0	0.94	AAS1
059	1ivs_C_U959_C960	NAN	NANT	0	0.30	OP12
060	1ivs_C_C960_C961	AAA	AA00	62	0.25	AA00
061	1ivs_C_C961_U962	AAA	AA00	75	0.31	AA00
062	1ivs_C_U962_A963	AAw	AA06	77	0.17	AA06
063	1ivs_C_A963_C964	AAA	AA08	71	0.21	AA08
064	1ivs_C_C964_G965	AAA	AA00	78	0.13	AA00
065	1ivs_C_G965_C966	AAw	AA11	90	0.12	AA11
066	1ivs_C_C966_C967	AAA	AA08	12	0.44	AA08
067	1ivs_C_C967_G968	AAA	AA00	87	0.23	AA00
068	1ivs_C_G968_C969	AAw	AA01	70	0.28	AA01
069	1ivs_C_C969_C970	AAA	AA08	87	0.20	AA08
070	1ivs_C_C970_C971	AAA	AA00	79	0.12	AA00
071	1ivs_C_C971_A972	AAA	AA00	75	0.19	AA00
072	1ivs_C_A972_C973	OPN	OP03	20	0.43	OP03
073	1ivs_C_C973_C974	NAN	NANT	0	1.22	IC03
074	1ivs_C_C974_A975	NAN	NANT	0	1.43	IC03
075	1ivs_D_G901_G902	AAw	AA01	39	0.24	AA01
076	1ivs_D_G902_G903	AAw	AA11	53	0.43	AA11
077	1ivs_D_G903_C904	AAA	AA08	66	0.22	AA08
078	1ivs_D_C904_G905	AAA	AA00	76	0.18	AA00
079	1ivs_D_G905_G906	AAA	AA00	88	0.19	AA00
080	1ivs_D_G906_C907	NAN	NANT	0	0.36	AB04
081	1ivs_D_C907_U908	NAN	NANT	0	1.68	OP16
082	1ivs_D_U908_A909	NAN	NANT	0	1.24	IC03
083	1ivs_D_A909_G910	NAN	NANT	0	1.60	OP25
084	1ivs_D_G910_C911	AAA	AA00	69	0.20	AA00
085	1ivs_D_C911_U912	AAA	AA00	90	0.18	AA00
086	1ivs_D_U912_C913	AAw	AA10	61	0.24	AA10
087	1ivs_D_C913_A914	AAw	AA10	44	0.36	AA10
088	1ivs_D_A914_G915	AAw	AA05	38	0.37	AA05
089	1ivs_D_G915_C916	NAN	NANT	0	0.65	IC06
090	1ivs_D_C916_G917	NAN	NANT	0	2.07	OP18
091	1ivs_D_G917_G918	NAN	NANT	0	0.92	BA16
092	1ivs_D_G918_A919	NAN	NANT	0	1.48	IC04
093	1ivs_D_A919_A920	NAN	NANT	0	1.29	OP17
094	1ivs_D_A920_G921	NAN	NANT	0	0.46	IC07
095	1ivs_D_G921_A922	AAA	AA00	68	0.17	AA00
096	1ivs_D_A922_G923	AAA	AA00	85	0.15	AA00
097	1ivs_D_G923_C924	AAA	AA00	80	0.17	AA00
098	1ivs_D_C924_G925	AAA	AA00	74	0.29	AA00
099	1ivs_D_G925_C926	AAA	AA00	85	0.23	AA00
100	1ivs_D_C926_U927	AAA	AA00	45	0.30	AA00
101	1ivs_D_U927_C928	AAA	AA00	52	0.26	AA00
102	1ivs_D_C928_G929	AAw	AA01	65	0.24	AA01
103	1ivs_D_G929_C930	AAw	AA11	70	0.39	AA11
104	1ivs_D_C930_C931	NAN	NANT	0	1.27	OP29
105	1ivs_D_C931_U932	NAN	NANT	0	2.26	OP16
106	1ivs_D_U932_C933	NAN	NANT	0	1.47	OP03
107	1ivs_D_C933_A934	NAN	NANT	0	1.16	OP30
108	1ivs_D_A934_C935	AAA	AA00	66	0.23	AA00
109	1ivs_D_C935_A936	NAN	NANT	0	0.62	IC02
110	1ivs_D_A936_C937	NAN	NANT	0	0.85	OP21
111	1ivs_D_C937_G938	NAN	NANT	0	1.49	OP01
112	1ivs_D_G938_C939	AAA	AA00	23	0.33	AA00
113	1ivs_D_C939_G940	AAA	AA00	26	0.22	AA00
114	1ivs_D_G940_A941	AAA	AA00	77	0.25	AA00
115	1ivs_D_A941_G942	AAw	AA01	84	0.13	AA01
116	1ivs_D_G942_A943	AAA	AA00	82	0.15	AA00
117	1ivs_D_A943_G944	AAA	AA00	24	0.41	AA00
118	1ivs_D_G944_G945	NAN	NANT	0	0.54	IC02
119	1ivs_D_G945_U946	NAN	NANT	0	1.43	OP17
120	1ivs_D_U946_C947	NAN	NANT	0	1.18	OP06
121	1ivs_D_C947_G948	NAN	NANT	0	1.42	OP06
122	1ivs_D_G948_U949	AAA	AA00	59	0.26	AA00
123	1ivs_D_U949_A950	AAA	AA00	77	0.18	AA00
124	1ivs_D_A950_G951	AAw	AA01	56	0.24	AA01
125	1ivs_D_G951_G952	NAN	NANT	0	0.44	AA10
126	1ivs_D_G952_U953	AAA	AA04	14	0.58	AA04
127	1ivs_D_U953_U954	AAA	AA00	72	0.24	AA00
128	1ivs_D_U954_C955	OPN	OP04	43	0.28	OP04
129	1ivs_D_C955_A956	AAw	AA01	39	0.44	AA01
130	1ivs_D_A956_A957	NAN	NANT	0	1.21	AA07
131	1ivs_D_A957_G958	NAN	NANT	0	1.75	OP28
132	1ivs_D_G958_U959	NAN	NANT	0	0.92	AAS1
133	1ivs_D_U959_C960	NAN	NANT	0	0.42	OP12
134	1ivs_D_C960_C961	AAA	AA00	25	0.38	AA00
135	1ivs_D_C961_U962	AAA	AA00	16	0.31	AA00
136	1ivs_D_U962_A963	AAw	AA06	79	0.14	AA06
137	1ivs_D_A963_C964	AAA	AA08	54	0.30	AA08
138	1ivs_D_C964_G965	AAA	AA08	75	0.24	AA08
139	1ivs_D_G965_C966	AAw	AA11	75	0.19	AA11
140	1ivs_D_C966_C967	AAA	AA08	28	0.35	AA08
141	1ivs_D_C967_G968	AAA	AA00	82	0.22	AA00
142	1ivs_D_G968_C969	AAw	AA01	79	0.32	AA01
143	1ivs_D_C969_C970	AAA	AA08	84	0.23	AA08
144	1ivs_D_C970_C971	AAA	AA00	68	0.14	AA00
145	1ivs_D_C971_A972	AAA	AA00	52	0.24	AA00
146	1ivs_D_A972_C973	NAN	NANT	0	0.52	OP03
147	1ivs_D_C973_C974	NAN	NANT	0	1.22	IC03
148	1ivs_D_C974_A975	NAN	NANT	0	0.96	IC07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible