Conformers:
ABBIImiBZICOPNSYNN
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HOMING ENDONUCLEASE/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ipp_C_DT201_DT202 | BBw | BB02 | 79 | 0.21 |
| 02 | 1ipp_C_DT202_DG203 | BBB | BB00 | 92 | 0.23 |
| 03 | 1ipp_C_DG203_DA204 | BBB | BB00 | 82 | 0.20 |
| 04 | 1ipp_C_DA204_DC205 | B-A | BA10 | 54 | 0.28 |
| 05 | 1ipp_C_DC205_DT206 | AAA | AA00 | 86 | 0.22 |
| 06 | 1ipp_C_DT206_DC207 | AAA | AA00 | 81 | 0.26 |
| 07 | 1ipp_C_DC207_DT208 | A-B | AB01 | 58 | 0.21 |
| 08 | 1ipp_C_DT208_DC209 | BBB | BB00 | 64 | 0.26 |
| 09 | 1ipp_C_DC209_DT210 | BBB | BB00 | 9 | 0.52 |
| 10 | 1ipp_C_DT210_DT211 | BBw | BB02 | 87 | 0.19 |
| 11 | 1ipp_C_DT211_DA212 | NAN | NANT | 0 | 0.49 |
| 12 | 1ipp_C_DA212_DA213 | B-A | BA13 | 51 | 0.41 |
| 13 | 1ipp_C_DG214_DA215 | AAw | AA01 | 67 | 0.25 |
| 14 | 1ipp_C_DA215_DG216 | AAA | AA00 | 68 | 0.17 |
| 15 | 1ipp_C_DG216_DA217 | A-B | AB05 | 63 | 0.28 |
| 16 | 1ipp_C_DA217_DG218 | BBB | BB00 | 51 | 0.34 |
| 17 | 1ipp_C_DG218_DT219 | BBB | BB00 | 68 | 0.27 |
| 18 | 1ipp_C_DT219_DC220 | NAN | NANT | 0 | 0.54 |
| 19 | 1ipp_C_DC220_DA221 | NAN | NANT | 0 | 0.31 |
| 20 | 1ipp_D_DT201_DT202 | BBB | BB00 | 59 | 0.26 |
| 21 | 1ipp_D_DT202_DG203 | BBB | BB00 | 72 | 0.24 |
| 22 | 1ipp_D_DG203_DA204 | BBB | BB00 | 88 | 0.21 |
| 23 | 1ipp_D_DA204_DC205 | B-A | BA10 | 54 | 0.24 |
| 24 | 1ipp_D_DC205_DT206 | AAA | AA00 | 84 | 0.19 |
| 25 | 1ipp_D_DT206_DC207 | AAA | AA00 | 87 | 0.22 |
| 26 | 1ipp_D_DC207_DT208 | A-B | AB01 | 67 | 0.29 |
| 27 | 1ipp_D_DT208_DC209 | BBB | BB00 | 69 | 0.32 |
| 28 | 1ipp_D_DC209_DT210 | BBB | BB00 | 34 | 0.47 |
| 29 | 1ipp_D_DT210_DT211 | BBB | BB00 | 55 | 0.23 |
| 30 | 1ipp_D_DT211_DA212 | NAN | NANT | 0 | 0.34 |
| 31 | 1ipp_D_DA212_DA213 | B-A | BA13 | 50 | 0.47 |
| 32 | 1ipp_D_DG214_DA215 | AAw | AA01 | 61 | 0.28 |
| 33 | 1ipp_D_DA215_DG216 | A-B | AB05 | 89 | 0.23 |
| 34 | 1ipp_D_DG216_DA217 | BBB | BB00 | 81 | 0.24 |
| 35 | 1ipp_D_DA217_DG218 | BBB | BB00 | 44 | 0.40 |
| 36 | 1ipp_D_DG218_DT219 | BBB | BB00 | 69 | 0.27 |
| 37 | 1ipp_D_DT219_DC220 | BBB | BB00 | 53 | 0.22 |
| 38 | 1ipp_D_DC220_DA221 | B12 | BB04 | 71 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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