Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of a 14mer RNA Containing Double UU Bulges in Two Crystal Forms: A Novel U*(AU) Intramolecular Base Triple
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ik5_A_G1_G2 | AAA | AA00 | 75 | 0.16 |
| 02 | 1ik5_A_G2_U3 | AAA | AA00 | 77 | 0.28 |
| 03 | 1ik5_A_U3_A4 | AAA | AA00 | 79 | 0.18 |
| 04 | 1ik5_A_A4_U5 | AAA | AA00 | 77 | 0.20 |
| 05 | 1ik5_A_U5_U6 | ICL | IC02 | 15 | 0.65 |
| 06 | 1ik5_A_U6_U7 | NAN | NANT | 0 | 0.70 |
| 07 | 1ik5_A_U7_C8 | NAN | NANT | 0 | 1.80 |
| 08 | 1ik5_A_C8_G9 | AAA | AA00 | 59 | 0.19 |
| 09 | 1ik5_A_G9_G10 | AAA | AA00 | 57 | 0.31 |
| 10 | 1ik5_A_G10_U11 | AAA | AA00 | 83 | 0.18 |
| 11 | 1ik5_A_U11_A12 | AAA | AA00 | 87 | 0.10 |
| 12 | 1ik5_A_A12_CBR13 | AAA | AA00 | 92 | 0.12 |
| 13 | 1ik5_A_CBR13_C14 | AAA | AA00 | 68 | 0.23 |
| 14 | 1ik5_B_G15_G16 | AAA | AA00 | 62 | 0.21 |
| 15 | 1ik5_B_G16_U17 | AAA | AA08 | 89 | 0.21 |
| 16 | 1ik5_B_U17_A18 | AAA | AA00 | 85 | 0.17 |
| 17 | 1ik5_B_A18_U19 | AAA | AA00 | 79 | 0.21 |
| 18 | 1ik5_B_U19_U20 | ICL | IC02 | 23 | 0.57 |
| 19 | 1ik5_B_U20_U21 | NAN | NANT | 0 | 0.64 |
| 20 | 1ik5_B_U21_U22 | NAN | NANT | 0 | 0.76 |
| 21 | 1ik5_B_U22_G23 | AAA | AA00 | 72 | 0.13 |
| 22 | 1ik5_B_G23_G24 | AAA | AA00 | 75 | 0.28 |
| 23 | 1ik5_B_G24_U25 | AAA | AA00 | 68 | 0.29 |
| 24 | 1ik5_B_U25_A26 | AAw | AA01 | 75 | 0.17 |
| 25 | 1ik5_B_A26_CBR27 | AAA | AA00 | 88 | 0.15 |
| 26 | 1ik5_B_CBR27_C28 | AAA | AA00 | 81 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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