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Conformers: ABBIImiBZICOPNSYNN
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Solution Structure of an RNA Hairpin from HRV-14

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011ik1_A_G1_G2AAAAA00720.20 AA00
021ik1_A_G2_U3AAAAA00720.18 AA00
031ik1_A_U3_A4AAAAA00720.25 AA00
041ik1_A_A4_C5AAwAA10290.46 AA10
051ik1_A_C5_U6OPNOP09470.26 OP09
061ik1_A_U6_A7NANNANT01.63 ZZ02
071ik1_A_A7_U8NANNANT00.68 BB08
081ik1_A_U8_G9NANNANT01.29 BB12
091ik1_A_G9_U10AAwAA01550.23 AA01
101ik1_A_U10_A11AAAAA00830.21 AA00
111ik1_A_A11_C12AAAAA00690.19 AA00
121ik1_A_C12_C13AAAAA00460.30 AA00
131ik1_A_C13_A14AAAAA00500.32 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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