Conformers:
ABBIImiBZICOPNSYNN
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DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ign_C_DC1_DC2 | NAN | NANT | 0 | 0.58 |
| 02 | 1ign_C_DC2_DG3 | BB2 | BB07 | 79 | 0.21 |
| 03 | 1ign_C_DG3_DC4 | B12 | BB04 | 74 | 0.20 |
| 04 | 1ign_C_DC4_DA5 | BBB | BB00 | 81 | 0.21 |
| 05 | 1ign_C_DA5_DC6 | B-A | BA01 | 71 | 0.28 |
| 06 | 1ign_C_DC6_DA7 | NAN | NANT | 0 | 0.46 |
| 07 | 1ign_C_DA7_DC8 | B-A | BA05 | 62 | 0.28 |
| 08 | 1ign_C_DC8_DC9 | BBB | BB01 | 34 | 0.30 |
| 09 | 1ign_C_DC9_DC10 | BBB | BB00 | 30 | 0.39 |
| 10 | 1ign_C_DC10_DA11 | BB2 | BB07 | 75 | 0.18 |
| 11 | 1ign_C_DA11_DC12 | BBB | BB00 | 52 | 0.29 |
| 12 | 1ign_C_DC12_DA13 | BB2 | BB07 | 49 | 0.34 |
| 13 | 1ign_C_DA13_DC14 | B-A | BA05 | 29 | 0.25 |
| 14 | 1ign_C_DC14_DA15 | BBB | BB01 | 33 | 0.36 |
| 15 | 1ign_C_DA15_DC16 | BBB | BB00 | 14 | 0.41 |
| 16 | 1ign_C_DC16_DC17 | BBB | BB00 | 31 | 0.35 |
| 17 | 1ign_C_DC17_DA18 | B12 | BB04 | 76 | 0.33 |
| 18 | 1ign_C_DA18_DG19 | BBB | BB00 | 66 | 0.32 |
| 19 | 1ign_D_DC20_DC21 | OPN | OP26 | 48 | 0.59 |
| 20 | 1ign_D_DC21_DT22 | A-B | AB05 | 45 | 0.24 |
| 21 | 1ign_D_DT22_DG23 | B12 | BB04 | 57 | 0.31 |
| 22 | 1ign_D_DG23_DG24 | BBB | BB00 | 46 | 0.24 |
| 23 | 1ign_D_DG24_DT25 | BBB | BB00 | 70 | 0.22 |
| 24 | 1ign_D_DT25_DG26 | B12 | BB04 | 63 | 0.36 |
| 25 | 1ign_D_DG26_DT27 | BBB | BB01 | 62 | 0.17 |
| 26 | 1ign_D_DT27_DG28 | BBB | BB00 | 32 | 0.33 |
| 27 | 1ign_D_DG28_DT29 | BB2 | BB07 | 58 | 0.38 |
| 28 | 1ign_D_DT29_DG30 | BBB | BB00 | 56 | 0.35 |
| 29 | 1ign_D_DG30_DG31 | B-A | BA05 | 11 | 0.35 |
| 30 | 1ign_D_DG31_DG32 | B-A | BA09 | 23 | 0.34 |
| 31 | 1ign_D_DG32_DT33 | A-B | AB05 | 40 | 0.29 |
| 32 | 1ign_D_DT33_DG34 | BBB | BB00 | 51 | 0.31 |
| 33 | 1ign_D_DG34_DT35 | BBB | BB00 | 44 | 0.25 |
| 34 | 1ign_D_DT35_DG36 | BBB | BB00 | 56 | 0.29 |
| 35 | 1ign_D_DG36_DC37 | BB2 | BB07 | 79 | 0.30 |
| 36 | 1ign_D_DC37_DG38 | NAN | NANT | 0 | 0.30 |
| 37 | 1ign_E_DC2_DG3 | NAN | NANT | 0 | 0.43 |
| 38 | 1ign_E_DG3_DC4 | B-A | BA05 | 79 | 0.26 |
| 39 | 1ign_E_DC4_DA5 | BBB | BB01 | 35 | 0.34 |
| 40 | 1ign_E_DA5_DC6 | B-A | BA05 | 29 | 0.19 |
| 41 | 1ign_E_DC6_DA7 | A-B | AB01 | 62 | 0.40 |
| 42 | 1ign_E_DA7_DC8 | B-A | BA05 | 93 | 0.22 |
| 43 | 1ign_E_DC8_DC9 | BBB | BB00 | 14 | 0.34 |
| 44 | 1ign_E_DC9_DC10 | BBB | BB00 | 52 | 0.46 |
| 45 | 1ign_E_DC10_DA11 | BB2 | BB07 | 86 | 0.18 |
| 46 | 1ign_E_DA11_DC12 | BBB | BB00 | 37 | 0.24 |
| 47 | 1ign_E_DC12_DA13 | BB2 | BB07 | 56 | 0.23 |
| 48 | 1ign_E_DA13_DC14 | B-A | BA05 | 28 | 0.23 |
| 49 | 1ign_E_DC14_DA15 | B-A | BA05 | 62 | 0.41 |
| 50 | 1ign_E_DA15_DC16 | A-B | AB01 | 15 | 0.43 |
| 51 | 1ign_E_DC16_DC17 | B-A | BA08 | 48 | 0.46 |
| 52 | 1ign_E_DC17_DA18 | NAN | NANT | 0 | 0.48 |
| 53 | 1ign_E_DA18_DG19 | NAN | NANT | 0 | 0.67 |
| 54 | 1ign_F_DC20_DC21 | NAN | NANT | 0 | 0.75 |
| 55 | 1ign_F_DC21_DT22 | A-B | AB01 | 30 | 0.36 |
| 56 | 1ign_F_DT22_DG23 | B12 | BB04 | 61 | 0.32 |
| 57 | 1ign_F_DG23_DG24 | BBB | BB00 | 77 | 0.24 |
| 58 | 1ign_F_DG24_DT25 | BBB | BB00 | 77 | 0.17 |
| 59 | 1ign_F_DT25_DG26 | B12 | BB04 | 54 | 0.34 |
| 60 | 1ign_F_DG26_DT27 | BBB | BB01 | 80 | 0.23 |
| 61 | 1ign_F_DT27_DG28 | BBB | BB00 | 25 | 0.48 |
| 62 | 1ign_F_DG28_DT29 | BB2 | BB07 | 57 | 0.39 |
| 63 | 1ign_F_DT29_DG30 | BBB | BB00 | 70 | 0.33 |
| 64 | 1ign_F_DG30_DG31 | BBB | BB00 | 68 | 0.25 |
| 65 | 1ign_F_DG31_DG32 | B-A | BA09 | 79 | 0.27 |
| 66 | 1ign_F_DG32_DT33 | A-B | AB05 | 83 | 0.22 |
| 67 | 1ign_F_DT33_DG34 | BBB | BB00 | 72 | 0.25 |
| 68 | 1ign_F_DG34_DT35 | BBB | BB00 | 38 | 0.32 |
| 69 | 1ign_F_DT35_DG36 | BBB | BB00 | 60 | 0.24 |
| 70 | 1ign_F_DG36_DC37 | BB2 | BB07 | 66 | 0.25 |
| 71 | 1ign_F_DC37_DG38 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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