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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011id3_I_DA1_DT2BBwBB16420.80 BB16
0021id3_I_DT2_DC3BBBBB00750.25 BB00
0031id3_I_DC3_DA4BBBBB00540.38 BB00
0041id3_I_DA4_DA5BBBBB00740.27 BB00
0051id3_I_DA5_DT6BBwBB02640.19 BB02
0061id3_I_DT6_DA7BBBBB00450.29 BB00
0071id3_I_DA7_DT8BBBBB00960.13 BB00
0081id3_I_DT8_DC9BBBBB00950.14 BB00
0091id3_I_DC9_DC10B12BB04620.38 BB04
0101id3_I_DC10_DA11B12BB04760.12 BB04
0111id3_I_DA11_DC12BBBBB00780.33 BB00
0121id3_I_DC12_DC13BBBBB00250.50 BB00
0131id3_I_DC13_DT14BBBBB00830.29 BB00
0141id3_I_DT14_DG15BB2BB07540.37 BB07
0151id3_I_DG15_DC16BBBBB00430.29 BB00
0161id3_I_DC16_DA17B12BB04310.49 BB04
0171id3_I_DA17_DG18BBBBB00720.29 BB00
0181id3_I_DG18_DA19B12BB04780.29 BB04
0191id3_I_DA19_DT20BBBBB00340.45 BB00
0201id3_I_DT20_DT21BBBBB00770.26 BB00
0211id3_I_DT21_DC22NANNANT00.57 BB13
0221id3_I_DC22_DT23NANNANT00.34 BB17
0231id3_I_DT23_DA24BBBBB00490.40 BB00
0241id3_I_DA24_DC25B12BB04700.38 BB04
0251id3_I_DC25_DC26NANNANT00.33 BB02
0261id3_I_DC26_DA27BB2BB07330.34 BB07
0271id3_I_DA27_DA28B12BB04720.24 BB04
0281id3_I_DA28_DA29BBwBB02790.24 BB02
0291id3_I_DA29_DA30BBBBB00470.32 BB00
0301id3_I_DA30_DG31BBBBB00690.31 BB00
0311id3_I_DG31_DT32BBBBB00420.33 BB00
0321id3_I_DT32_DG33BBBBB00850.26 BB00
0331id3_I_DG33_DT34miBBB13540.38 BB13
0341id3_I_DT34_DA35BBBBB00680.33 BB00
0351id3_I_DA35_DT36BBBBB00790.27 BB00
0361id3_I_DT36_DT37BB2BB07530.34 BB07
0371id3_I_DT37_DT38BBBBB00690.37 BB00
0381id3_I_DT38_DG39B12BB04250.44 BB04
0391id3_I_DG39_DG40BBBBB00420.40 BB00
0401id3_I_DG40_DA41B12BB04630.20 BB04
0411id3_I_DA41_DA42BBBBB00500.29 BB00
0421id3_I_DA42_DA43BBBBB00590.39 BB00
0431id3_I_DA43_DC44BBBBB00260.50 BB00
0441id3_I_DC44_DT45BBBBB00290.24 BB00
0451id3_I_DT45_DG46NANNANT00.34 BB07
0461id3_I_DG46_DC47BBBBB00610.23 BB00
0471id3_I_DC47_DT48BBwBB11470.57 BB11
0481id3_I_DT48_DC49BBwBB16620.36 BB16
0491id3_I_DC49_DC50BB2BB07320.45 BB07
0501id3_I_DC50_DA51BBBBB00640.30 BB00
0511id3_I_DA51_DT52BBBBB00810.23 BB00
0521id3_I_DT52_DC53BBBBB00700.27 BB00
0531id3_I_DC53_DA54B12BB04650.34 BB04
0541id3_I_DA54_DA55BBBBB00390.36 BB00
0551id3_I_DA55_DA56B12BB04430.33 BB04
0561id3_I_DA56_DA57B12BB04560.32 BB04
0571id3_I_DA57_DG58BBBBB00750.41 BB00
0581id3_I_DG58_DG59BB2BB07470.31 BB07
0591id3_I_DG59_DC60B12BB04650.21 BB04
0601id3_I_DC60_DA61BBBBB00820.35 BB00
0611id3_I_DA61_DT62NANNANT00.39 BB02
0621id3_I_DT62_DG63B12BB04700.31 BB04
0631id3_I_DG63_DT64BBBBB00790.31 BB00
0641id3_I_DT64_DT65BBBBB00840.22 BB00
0651id3_I_DT65_DC66BBBBB00560.20 BB00
0661id3_I_DC66_DA67BB2BB07600.34 BB07
0671id3_I_DA67_DG68B12BB04150.45 BB04
0681id3_I_DG68_DC69BB2BB07570.23 BB07
0691id3_I_DC69_DG70BBBBB00560.31 BB00
0701id3_I_DG70_DG71B12BB04620.30 BB04
0711id3_I_DG71_DA72B12BB04780.14 BB04
0721id3_I_DA72_DA73BBBBB00950.21 BB00
0731id3_I_DA73_DT74BBBBB00690.27 BB00
0741id3_I_DT74_DT75B12BB04700.22 BB04
0751id3_I_DT75_DC76BBBBB00690.32 BB00
0761id3_I_DC76_DC77BB2BB07410.16 BB07
0771id3_I_DC77_DG78BB2BB07580.31 BB07
0781id3_I_DG78_DC79BB2BB07450.24 BB07
0791id3_I_DC79_DT80B12BB04820.28 BB04
0801id3_I_DT80_DG81B12BB04780.28 BB04
0811id3_I_DG81_DA82BBBBB00850.28 BB00
0821id3_I_DA82_DA83BBBBB00730.16 BB00
0831id3_I_DA83_DC84BBBBB00350.21 BB00
0841id3_I_DC84_DA85B12BB04400.20 BB04
0851id3_I_DA85_DT86B12BB04860.20 BB04
0861id3_I_DT86_DG87BBBBB00570.44 BB00
0871id3_I_DG87_DC88BB2BB07260.35 BB07
0881id3_I_DC88_DC89BBBBB00710.30 BB00
0891id3_I_DC89_DT90BB2BB07330.38 BB07
0901id3_I_DT90_DT91BBBBB00880.18 BB00
0911id3_I_DT91_DT92BBBBB00960.14 BB00
0921id3_I_DT92_DT93BBBBB00850.27 BB00
0931id3_I_DT93_DG94NANNANT00.63 BB02
0941id3_I_DG94_DA95BBBBB00750.38 BB00
0951id3_I_DA95_DT96BBBBB00440.23 BB00
0961id3_I_DT96_DG97B12BB04470.15 BB04
0971id3_I_DG97_DG98BBBBB00800.26 BB00
0981id3_I_DG98_DA99BB2BB07510.34 BB07
0991id3_I_DA99_DG100BBwBB02200.28 BB02
1001id3_I_DG100_DC101BBBBB00720.39 BB00
1011id3_I_DC101_DA102BBBBB00710.26 BB00
1021id3_I_DA102_DG103B12BB04870.24 BB04
1031id3_I_DG103_DT104BBwBB02530.29 BB02
1041id3_I_DT104_DT105BBBBB00890.11 BB00
1051id3_I_DT105_DT106BBBBB00870.18 BB00
1061id3_I_DT106_DC107BBBBB00110.62 BB00
1071id3_I_DC107_DC108BB2BB07220.33 BB07
1081id3_I_DC108_DA109BB2BB07490.39 BB07
1091id3_I_DA109_DA110miBBB10430.35 BB10
1101id3_I_DA110_DA111B12BB04730.17 BB04
1111id3_I_DA111_DT112B12BB04800.21 BB04
1121id3_I_DT112_DA113BBBBB00590.35 BB00
1131id3_I_DA113_DC114miBBB13400.37 BB13
1141id3_I_DC114_DA115BBBBB00670.42 BB00
1151id3_I_DA115_DC116BBBBB00770.19 BB00
1161id3_I_DC116_DT117BBBBB00720.36 BB00
1171id3_I_DT117_DT118BBBBB00850.25 BB00
1181id3_I_DT118_DT119BBBBB00650.37 BB00
1191id3_I_DT119_DT120BBBBB00820.28 BB00
1201id3_I_DT120_DG121B12BB04300.47 BB04
1211id3_I_DG121_DG122BBBBB00740.36 BB00
1221id3_I_DG122_DT123BBBBB00680.23 BB00
1231id3_I_DT123_DA124B12BB04500.33 BB04
1241id3_I_DA124_DG125BBBBB00390.42 BB00
1251id3_I_DG125_DA126BB2BB07330.46 BB07
1261id3_I_DA126_DA127BBBBB00750.26 BB00
1271id3_I_DA127_DT128BBBBB00750.31 BB00
1281id3_I_DT128_DC129BB2BB07660.22 BB07
1291id3_I_DC129_DT130BBBBB00590.30 BB00
1301id3_I_DT130_DG131BB2BB07950.20 BB07
1311id3_I_DG131_DC132BBBBB00770.20 BB00
1321id3_I_DC132_DA133BB2BB07870.34 BB07
1331id3_I_DA133_DG134BBBBB00730.20 BB00
1341id3_I_DG134_DG135B12BB04890.17 BB04
1351id3_I_DG135_DT136BBBBB00270.53 BB00
1361id3_I_DT136_DG137BBBBB00380.32 BB00
1371id3_I_DG137_DG138B12BB04740.20 BB04
1381id3_I_DG138_DA139B12BB04600.32 BB04
1391id3_I_DA139_DT140BBBBB00520.41 BB00
1401id3_I_DT140_DA141BBBBB00600.43 BB00
1411id3_I_DA141_DT142BBBBB00850.23 BB00
1421id3_I_DT142_DT143BBBBB00950.16 BB00
1431id3_I_DT143_DG144BBBBB00560.28 BB00
1441id3_I_DG144_DA145BB2BB07410.46 BB07
1451id3_I_DA145_DT146BBBBB00570.24 BB00
1461id3_J_DA147_DT148NANNANT00.49 BB17
1471id3_J_DT148_DC149miBBB12790.25 BB12
1481id3_J_DC149_DA150NANNANT00.74 BB13
1491id3_J_DA150_DA151BBBBB00450.42 BB00
1501id3_J_DA151_DT152BBwBB02770.18 BB02
1511id3_J_DT152_DA153BBBBB00840.21 BB00
1521id3_J_DA153_DT154BBBBB00920.19 BB00
1531id3_J_DT154_DC155BBwBB02780.20 BB02
1541id3_J_DC155_DC156BBBBB00380.38 BB00
1551id3_J_DC156_DA157BB2BB07420.23 BB07
1561id3_J_DA157_DC158NANNANT00.42 BB17
1571id3_J_DC158_DC159BBBBB00780.20 BB00
1581id3_J_DC159_DT160BBBBB00750.27 BB00
1591id3_J_DT160_DG161B12BB04580.39 BB04
1601id3_J_DG161_DC162BBBBB00530.42 BB00
1611id3_J_DC162_DA163BB2BB07560.30 BB07
1621id3_J_DA163_DG164BBBBB00750.21 BB00
1631id3_J_DG164_DA165B12BB04510.35 BB04
1641id3_J_DA165_DT166BBBBB00490.35 BB00
1651id3_J_DT166_DT167B12BB04890.25 BB04
1661id3_J_DT167_DC168BBwBB02120.35 BB02
1671id3_J_DC168_DT169B12BB04610.43 BB04
1681id3_J_DT169_DA170NANNANT00.41 BB17
1691id3_J_DA170_DC171BB2BB07460.26 BB07
1701id3_J_DC171_DC172BBBBB00570.31 BB00
1711id3_J_DC172_DA173BB2BB07400.52 BB07
1721id3_J_DA173_DA174NANNANT00.38 BB00
1731id3_J_DA174_DA175NANNANT00.62 BB02
1741id3_J_DA175_DA176BBBBB00610.46 BB00
1751id3_J_DA176_DG177BBBBB00870.20 BB00
1761id3_J_DG177_DT178BBBBB00850.18 BB00
1771id3_J_DT178_DG179B12BB04820.22 BB04
1781id3_J_DG179_DT180BBBBB00690.30 BB00
1791id3_J_DT180_DA181BBBBB00170.41 BB00
1801id3_J_DA181_DT182BBBBB00760.25 BB00
1811id3_J_DT182_DT183BBBBB00830.30 BB00
1821id3_J_DT183_DT184BBBBB00880.20 BB00
1831id3_J_DT184_DG185NANNANT00.81 BB07
1841id3_J_DG185_DG186NANNANT00.52 BB04
1851id3_J_DG186_DA187BB2BB07420.24 BB07
1861id3_J_DA187_DA188BBBBB00630.25 BB00
1871id3_J_DA188_DA189BBBBB00930.20 BB00
1881id3_J_DA189_DC190BBBBB00840.23 BB00
1891id3_J_DC190_DT191BBBBB00680.22 BB00
1901id3_J_DT191_DG192BB2BB07730.34 BB07
1911id3_J_DG192_DC193BBBBB00820.23 BB00
1921id3_J_DC193_DT194BB2BB07780.20 BB07
1931id3_J_DT194_DC195BBBBB00700.29 BB00
1941id3_J_DC195_DC196BB2BB07860.28 BB07
1951id3_J_DC196_DA197BBBBB00820.22 BB00
1961id3_J_DA197_DT198BBwBB02630.26 BB02
1971id3_J_DT198_DC199BBBBB00540.47 BB00
1981id3_J_DC199_DA200NANNANT00.47 BB00
1991id3_J_DA200_DA201BBBBB00460.49 BB00
2001id3_J_DA201_DA202B12BB04370.38 BB04
2011id3_J_DA202_DA203BBBBB00370.37 BB00
2021id3_J_DA203_DG204B12BB04410.20 BB04
2031id3_J_DG204_DG205BB2BB07250.46 BB07
2041id3_J_DG205_DC206BBBBB00770.25 BB00
2051id3_J_DC206_DA207B12BB04750.24 BB04
2061id3_J_DA207_DT208BBBBB00780.17 BB00
2071id3_J_DT208_DG209BBBBB00810.20 BB00
2081id3_J_DG209_DT210BBBBB00870.27 BB00
2091id3_J_DT210_DT211BBBBB00700.36 BB00
2101id3_J_DT211_DC212BBBBB00780.25 BB00
2111id3_J_DC212_DA213BBBBB00810.21 BB00
2121id3_J_DA213_DG214BB2BB07210.31 BB07
2131id3_J_DG214_DC215B12BB04320.38 BB04
2141id3_J_DC215_DG216BB2BB07900.17 BB07
2151id3_J_DG216_DG217B12BB04810.21 BB04
2161id3_J_DG217_DA218BBBBB00750.26 BB00
2171id3_J_DA218_DA219B12BB04510.19 BB04
2181id3_J_DA219_DT220BBBBB00810.27 BB00
2191id3_J_DT220_DT221BBBBB00710.33 BB00
2201id3_J_DT221_DC222BBBBB00780.23 BB00
2211id3_J_DC222_DC223BBBBB00790.25 BB00
2221id3_J_DC223_DG224B12BB04550.30 BB04
2231id3_J_DG224_DC225BBBBB00760.18 BB00
2241id3_J_DC225_DT226NANNANT00.40 BB07
2251id3_J_DT226_DG227B12BB05290.44 BB05
2261id3_J_DG227_DA228BBBBB00630.39 BB00
2271id3_J_DA228_DA229BBBBB00950.09 BB00
2281id3_J_DA229_DC230BBBBB00690.21 BB00
2291id3_J_DC230_DA231B12BB04870.29 BB04
2301id3_J_DA231_DT232BBBBB00840.18 BB00
2311id3_J_DT232_DG233NANNANT00.42 BB16
2321id3_J_DG233_DC234NANNANT00.63 BB07
2331id3_J_DC234_DC235NANNANT00.45 BB04
2341id3_J_DC235_DT236B12BB04420.22 BB04
2351id3_J_DT236_DT237B12BB04650.28 BB04
2361id3_J_DT237_DT238BBBBB00790.21 BB00
2371id3_J_DT238_DT239BBBBB00850.22 BB00
2381id3_J_DT239_DG240BBBBB00900.20 BB00
2391id3_J_DG240_DA241BBBBB00740.24 BB00
2401id3_J_DA241_DT242BBBBB00650.32 BB00
2411id3_J_DT242_DG243BBwBB11480.56 BB11
2421id3_J_DG243_DG244BBBBB00340.41 BB00
2431id3_J_DG244_DA245BB2BB07660.37 BB07
2441id3_J_DA245_DG246NANNANT00.28 BB03
2451id3_J_DG246_DC247BB2BB07660.17 BB07
2461id3_J_DC247_DA248BBwBB11770.43 BB11
2471id3_J_DA248_DG249BBBBB00370.51 BB00
2481id3_J_DG249_DT250BBBBB00820.23 BB00
2491id3_J_DT250_DT251B12BB04820.25 BB04
2501id3_J_DT251_DT252BBBBB00790.35 BB00
2511id3_J_DT252_DC253B12BB04410.47 BB04
2521id3_J_DC253_DC254B12BB04600.34 BB04
2531id3_J_DC254_DA255BB2BB07660.28 BB07
2541id3_J_DA255_DA256BBBBB00830.14 BB00
2551id3_J_DA256_DA257B12BB04490.19 BB04
2561id3_J_DA257_DT258BBwBB11520.22 BB11
2571id3_J_DT258_DA259BBwBB02650.42 BB02
2581id3_J_DA259_DC260B12BB04280.49 BB04
2591id3_J_DC260_DA261BBBBB00420.32 BB00
2601id3_J_DA261_DC262BBwBB02560.31 BB02
2611id3_J_DC262_DT263BBBBB00750.29 BB00
2621id3_J_DT263_DT264BBBBB00690.34 BB00
2631id3_J_DT264_DT265BBBBB00800.29 BB00
2641id3_J_DT265_DT266BBBBB00770.22 BB00
2651id3_J_DT266_DG267B12BB04530.42 BB04
2661id3_J_DG267_DG268BBwBB11690.39 BB11
2671id3_J_DG268_DT269NANNANT00.62 BB16
2681id3_J_DT269_DA270NANNANT00.64 BB07
2691id3_J_DA270_DG271BBBBB00410.41 BB00
2701id3_J_DG271_DA272BBBBB00670.40 BB00
2711id3_J_DA272_DA273B12BB04410.42 BB04
2721id3_J_DA273_DT274BBBBB00790.37 BB00
2731id3_J_DT274_DC275NANNANT00.40 BB07
2741id3_J_DC275_DT276BBBBB00110.34 BB00
2751id3_J_DT276_DG277BB2BB07890.27 BB07
2761id3_J_DG277_DC278BBBBB00760.17 BB00
2771id3_J_DC278_DA279BB2BB07790.31 BB07
2781id3_J_DA279_DG280BBBBB00760.26 BB00
2791id3_J_DG280_DG281NANNANT00.39 BB02
2801id3_J_DG281_DT282BBBBB00740.28 BB00
2811id3_J_DT282_DG283BBBBB00150.43 BB00
2821id3_J_DG283_DG284B12BB04690.24 BB04
2831id3_J_DG284_DA285BBBBB00790.32 BB00
2841id3_J_DA285_DT286BBBBB00340.37 BB00
2851id3_J_DT286_DA287BBwBB03380.55 BB03
2861id3_J_DA287_DT288BBBBB00320.34 BB00
2871id3_J_DT288_DT289BBwBB02910.15 BB02
2881id3_J_DT289_DG290BBBBB00590.32 BB00
2891id3_J_DG290_DA291B12BB04730.25 BB04
2901id3_J_DA291_DT292BBBBB00840.27 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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