DNATCO v4.1: results

STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE

Results of the assignment of 231 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1i9f-m1_A_G1_G2	AAA	AA00	44	0.44	AA00
002	1i9f-m2_A_G1_G2	AAA	AA00	65	0.31	AA00
003	1i9f-m3_A_G1_G2	AAA	AA04	80	0.28	AA04
004	1i9f-m4_A_G1_G2	AAA	AA00	27	0.40	AA00
005	1i9f-m5_A_G1_G2	AAA	AA00	30	0.32	AA00
006	1i9f-m6_A_G1_G2	AAA	AA00	83	0.27	AA00
007	1i9f-m7_A_G1_G2	AAA	AA04	38	0.48	AA04
008	1i9f-m1_A_G2_U3	AAA	AA00	49	0.37	AA00
009	1i9f-m2_A_G2_U3	AAA	AA00	77	0.29	AA00
010	1i9f-m3_A_G2_U3	AAA	AA00	17	0.37	AA00
011	1i9f-m4_A_G2_U3	AAA	AA00	34	0.28	AA00
012	1i9f-m5_A_G2_U3	AAA	AA00	60	0.28	AA00
013	1i9f-m6_A_G2_U3	AAA	AA00	77	0.24	AA00
014	1i9f-m7_A_G2_U3	AAA	AA00	17	0.40	AA00
015	1i9f-m1_A_U3_C4	AAA	AA00	74	0.24	AA00
016	1i9f-m2_A_U3_C4	AAA	AA00	67	0.23	AA00
017	1i9f-m3_A_U3_C4	AAA	AA00	79	0.20	AA00
018	1i9f-m4_A_U3_C4	NAN	NANT	0	0.49	AA02
019	1i9f-m5_A_U3_C4	AAA	AA00	61	0.32	AA00
020	1i9f-m6_A_U3_C4	AAA	AA00	24	0.33	AA00
021	1i9f-m7_A_U3_C4	AAA	AA08	37	0.55	AA08
022	1i9f-m1_A_C4_U5	AAA	AA00	26	0.30	AA00
023	1i9f-m2_A_C4_U5	AAA	AA00	50	0.28	AA00
024	1i9f-m3_A_C4_U5	AAA	AA00	68	0.26	AA00
025	1i9f-m4_A_C4_U5	AAu	AA12	35	0.34	AA12
026	1i9f-m5_A_C4_U5	AAA	AA00	75	0.22	AA00
027	1i9f-m6_A_C4_U5	AAA	AA00	38	0.34	AA00
028	1i9f-m7_A_C4_U5	AAA	AA00	17	0.39	AA00
029	1i9f-m1_A_U5_G6	A-B	AB05	24	0.27	AB05
030	1i9f-m2_A_U5_G6	A-B	AB05	86	0.15	AB05
031	1i9f-m3_A_U5_G6	A-B	AB05	60	0.17	AB05
032	1i9f-m4_A_U5_G6	A-B	AB05	65	0.39	AB05
033	1i9f-m5_A_U5_G6	A-B	AB05	63	0.24	AB05
034	1i9f-m6_A_U5_G6	A-B	AB05	73	0.24	AB05
035	1i9f-m7_A_U5_G6	A-B	AB01	58	0.27	AB01
036	1i9f-m1_A_G6_G7	NAN	NANT	0	0.53	BA17
037	1i9f-m2_A_G6_G7	NAN	NANT	0	0.55	BA17
038	1i9f-m3_A_G6_G7	B-A	BA17	27	0.37	BA17
039	1i9f-m4_A_G6_G7	NAN	NANT	0	0.44	BA17
040	1i9f-m5_A_G6_G7	NAN	NANT	0	0.84	OP26
041	1i9f-m6_A_G6_G7	NAN	NANT	0	0.42	BA17
042	1i9f-m7_A_G6_G7	B-A	BA17	22	0.47	BA17
043	1i9f-m1_A_G7_G8	NAN	NANT	0	0.51	AB04
044	1i9f-m2_A_G7_G8	A-B	AB05	21	0.51	AB05
045	1i9f-m3_A_G7_G8	A-B	AB01	33	0.36	AB01
046	1i9f-m4_A_G7_G8	A-B	AB01	42	0.26	AB01
047	1i9f-m5_A_G7_G8	A-B	AB01	15	0.48	AB01
048	1i9f-m6_A_G7_G8	A-B	AB01	17	0.33	AB01
049	1i9f-m7_A_G7_G8	A-B	AB05	22	0.41	AB05
050	1i9f-m1_A_G8_C9	NAN	NANT	0	0.60	BA08
051	1i9f-m2_A_G8_C9	B-A	BA08	42	0.49	BA08
052	1i9f-m3_A_G8_C9	NAN	NANT	0	0.66	BA08
053	1i9f-m4_A_G8_C9	NAN	NANT	0	0.67	BA08
054	1i9f-m5_A_G8_C9	NAN	NANT	0	0.68	BA08
055	1i9f-m6_A_G8_C9	NAN	NANT	0	0.69	BA08
056	1i9f-m7_A_G8_C9	NAN	NANT	0	0.71	BA08
057	1i9f-m1_A_C9_G10	NAN	NANT	0	0.41	AA04
058	1i9f-m2_A_C9_G10	NAN	NANT	0	0.51	AA04
059	1i9f-m3_A_C9_G10	AAA	AA04	72	0.33	AA04
060	1i9f-m4_A_C9_G10	AAA	AA00	17	0.52	AA00
061	1i9f-m5_A_C9_G10	NAN	NANT	0	0.65	AA00
062	1i9f-m6_A_C9_G10	AAA	AA00	35	0.39	AA00
063	1i9f-m7_A_C9_G10	AAA	AA00	57	0.21	AA00
064	1i9f-m1_A_G10_C11	NAN	NANT	0	0.59	AA01
065	1i9f-m2_A_G10_C11	NAN	NANT	0	0.50	AA04
066	1i9f-m3_A_G10_C11	A-B	AB05	28	0.30	AB05
067	1i9f-m4_A_G10_C11	AAA	AA04	37	0.42	AA04
068	1i9f-m5_A_G10_C11	NAN	NANT	0	0.52	AA09
069	1i9f-m6_A_G10_C11	AAA	AA00	21	0.40	AA00
070	1i9f-m7_A_G10_C11	AAA	AA00	93	0.17	AA00
071	1i9f-m1_A_C11_A12	AAA	AA04	76	0.25	AA04
072	1i9f-m2_A_C11_A12	NAN	NANT	0	0.48	AA04
073	1i9f-m3_A_C11_A12	NAN	NANT	0	0.81	AA04
074	1i9f-m4_A_C11_A12	AAA	AA04	47	0.43	AA04
075	1i9f-m5_A_C11_A12	AAA	AA04	50	0.43	AA04
076	1i9f-m6_A_C11_A12	AAA	AA00	28	0.28	AA00
077	1i9f-m7_A_C11_A12	AAA	AA00	87	0.18	AA00
078	1i9f-m1_A_A12_G13	AAA	AA04	65	0.22	AA04
079	1i9f-m2_A_A12_G13	AAA	AA04	54	0.24	AA04
080	1i9f-m3_A_A12_G13	AAA	AA00	5	0.40	AA00
081	1i9f-m4_A_A12_G13	AAA	AA00	18	0.33	AA00
082	1i9f-m5_A_A12_G13	AAA	AA04	51	0.24	AA04
083	1i9f-m6_A_A12_G13	AAA	AA04	71	0.25	AA04
084	1i9f-m7_A_A12_G13	AAA	AA00	62	0.18	AA00
085	1i9f-m1_A_G13_C14	NAN	NANT	0	0.78	AA12
086	1i9f-m2_A_G13_C14	NAN	NANT	0	0.83	AA07
087	1i9f-m3_A_G13_C14	NAN	NANT	0	0.89	AA07
088	1i9f-m4_A_G13_C14	NAN	NANT	0	0.65	AB04
089	1i9f-m5_A_G13_C14	NAN	NANT	0	0.88	AA12
090	1i9f-m6_A_G13_C14	NAN	NANT	0	0.62	AB04
091	1i9f-m7_A_G13_C14	AAA	AA08	18	0.52	AA08
092	1i9f-m1_A_C14_G15	AAw	AA01	16	0.57	AA01
093	1i9f-m2_A_C14_G15	AAw	AA01	7	0.65	AA01
094	1i9f-m3_A_C14_G15	AAw	AA01	8	0.59	AA01
095	1i9f-m4_A_C14_G15	NAN	NANT	0	0.54	AA12
096	1i9f-m5_A_C14_G15	AAw	AA01	21	0.45	AA01
097	1i9f-m6_A_C14_G15	AAA	AA02	21	0.33	AA02
098	1i9f-m7_A_C14_G15	AAA	AA04	55	0.30	AA04
099	1i9f-m1_A_G15_C16	NAN	NANT	0	2.00	OP17
100	1i9f-m2_A_G15_C16	NAN	NANT	0	2.11	OP17
101	1i9f-m3_A_G15_C16	NAN	NANT	0	2.11	OP17
102	1i9f-m4_A_G15_C16	NAN	NANT	0	1.94	OP17
103	1i9f-m5_A_G15_C16	NAN	NANT	0	2.19	OP17
104	1i9f-m6_A_G15_C16	NAN	NANT	0	2.11	OP17
105	1i9f-m7_A_G15_C16	NAN	NANT	0	1.42	OP17
106	1i9f-m1_A_C16_A17	NAN	NANT	0	1.58	BA10
107	1i9f-m2_A_C16_A17	NAN	NANT	0	1.65	BA10
108	1i9f-m3_A_C16_A17	NAN	NANT	0	1.61	BA10
109	1i9f-m4_A_C16_A17	NAN	NANT	0	1.49	BA10
110	1i9f-m5_A_C16_A17	NAN	NANT	0	1.49	BA16
111	1i9f-m6_A_C16_A17	NAN	NANT	0	1.29	BB03
112	1i9f-m7_A_C16_A17	NAN	NANT	0	1.29	BB03
113	1i9f-m1_A_A17_A18	AAA	AA04	76	0.23	AA04
114	1i9f-m2_A_A17_A18	AAw	AA01	11	0.42	AA01
115	1i9f-m3_A_A17_A18	AAw	AA01	53	0.37	AA01
116	1i9f-m4_A_A17_A18	AAA	AA00	22	0.34	AA00
117	1i9f-m5_A_A17_A18	AAA	AA04	67	0.26	AA04
118	1i9f-m6_A_A17_A18	AAw	AA01	40	0.21	AA01
119	1i9f-m7_A_A17_A18	AAA	AA00	17	0.48	AA00
120	1i9f-m1_A_A18_G19	AAA	AA00	18	0.35	AA00
121	1i9f-m2_A_A18_G19	AAA	AA04	13	0.53	AA04
122	1i9f-m3_A_A18_G19	AAA	AA04	20	0.52	AA04
123	1i9f-m4_A_A18_G19	AAA	AA04	23	0.66	AA04
124	1i9f-m5_A_A18_G19	AAA	AA04	37	0.37	AA04
125	1i9f-m6_A_A18_G19	AAA	AA04	44	0.39	AA04
126	1i9f-m7_A_A18_G19	AAA	AA00	17	0.53	AA00
127	1i9f-m1_A_G19_C20	AAw	AA01	13	0.73	AA01
128	1i9f-m2_A_G19_C20	AAu	AA12	62	0.20	AA12
129	1i9f-m3_A_G19_C20	AAw	AA01	31	0.49	AA01
130	1i9f-m4_A_G19_C20	AAw	AA01	52	0.46	AA01
131	1i9f-m5_A_G19_C20	NAN	NANT	0	0.71	AA01
132	1i9f-m6_A_G19_C20	AAu	AA12	53	0.21	AA12
133	1i9f-m7_A_G19_C20	AAw	AA01	26	0.52	AA01
134	1i9f-m1_A_C20_U21	AAA	AA08	42	0.35	AA08
135	1i9f-m2_A_C20_U21	AAA	AA00	43	0.33	AA00
136	1i9f-m3_A_C20_U21	AAA	AA00	43	0.32	AA00
137	1i9f-m4_A_C20_U21	AAA	AA08	64	0.28	AA08
138	1i9f-m5_A_C20_U21	NAN	NANT	0	0.38	AA00
139	1i9f-m6_A_C20_U21	AAA	AA00	13	0.41	AA00
140	1i9f-m7_A_C20_U21	AAA	AA00	12	0.33	AA00
141	1i9f-m1_A_U21_G22	AAA	AA00	77	0.22	AA00
142	1i9f-m2_A_U21_G22	AAA	AA00	54	0.30	AA00
143	1i9f-m3_A_U21_G22	AAA	AA00	64	0.24	AA00
144	1i9f-m4_A_U21_G22	AAu	AA12	37	0.38	AA12
145	1i9f-m5_A_U21_G22	AAA	AA00	36	0.31	AA00
146	1i9f-m6_A_U21_G22	AAA	AA00	16	0.39	AA00
147	1i9f-m7_A_U21_G22	AAA	AA00	48	0.25	AA00
148	1i9f-m1_A_G22_A23	NAN	NANT	0	1.54	OP17
149	1i9f-m2_A_G22_A23	NAN	NANT	0	1.46	OP17
150	1i9f-m3_A_G22_A23	NAN	NANT	0	1.50	OP06
151	1i9f-m4_A_G22_A23	NAN	NANT	0	1.70	OP17
152	1i9f-m5_A_G22_A23	NAN	NANT	0	1.63	OP17
153	1i9f-m6_A_G22_A23	NAN	NANT	0	1.51	OP17
154	1i9f-m7_A_G22_A23	NAN	NANT	0	1.48	OP17
155	1i9f-m1_A_A23_C24	NAN	NANT	0	2.28	OP16
156	1i9f-m2_A_A23_C24	NAN	NANT	0	1.30	OP11
157	1i9f-m3_A_A23_C24	NAN	NANT	0	1.37	OP06
158	1i9f-m4_A_A23_C24	NAN	NANT	0	2.30	OP16
159	1i9f-m5_A_A23_C24	NAN	NANT	0	2.33	OP16
160	1i9f-m6_A_A23_C24	NAN	NANT	0	2.25	OP16
161	1i9f-m7_A_A23_C24	NAN	NANT	0	2.23	OP16
162	1i9f-m1_A_C24_G25	AAA	AA00	80	0.20	AA00
163	1i9f-m2_A_C24_G25	AAA	AA00	69	0.26	AA00
164	1i9f-m3_A_C24_G25	AAA	AA00	61	0.29	AA00
165	1i9f-m4_A_C24_G25	AAA	AA00	74	0.23	AA00
166	1i9f-m5_A_C24_G25	AAA	AA00	30	0.29	AA00
167	1i9f-m6_A_C24_G25	AAA	AA00	61	0.31	AA00
168	1i9f-m7_A_C24_G25	AAA	AA00	79	0.20	AA00
169	1i9f-m1_A_G25_G26	NAN	NANT	0	0.47	ZZ01
170	1i9f-m2_A_G25_G26	NAN	NANT	0	0.63	ZZ01
171	1i9f-m3_A_G25_G26	ZZZ	ZZ01	48	0.33	ZZ01
172	1i9f-m4_A_G25_G26	NAN	NANT	0	0.44	ZZ01
173	1i9f-m5_A_G25_G26	NAN	NANT	0	0.45	ZZ01
174	1i9f-m6_A_G25_G26	NAN	NANT	0	0.50	ZZ01
175	1i9f-m7_A_G25_G26	NAN	NANT	0	0.50	ZZ01
176	1i9f-m1_A_G26_U27	NAN	NANT	0	0.57	OP21
177	1i9f-m2_A_G26_U27	NAN	NANT	0	0.97	OP18
178	1i9f-m3_A_G26_U27	NAN	NANT	0	0.59	OP21
179	1i9f-m4_A_G26_U27	NAN	NANT	0	0.56	OP21
180	1i9f-m5_A_G26_U27	NAN	NANT	0	0.94	OP18
181	1i9f-m6_A_G26_U27	NAN	NANT	0	0.61	OP21
182	1i9f-m7_A_G26_U27	NAN	NANT	0	0.56	OP21
183	1i9f-m1_A_U27_A28	OPN	OP11	61	0.32	OP11
184	1i9f-m2_A_U27_A28	OPN	OP11	48	0.42	OP11
185	1i9f-m3_A_U27_A28	OPN	OP11	62	0.31	OP11
186	1i9f-m4_A_U27_A28	OPN	OP11	56	0.36	OP11
187	1i9f-m5_A_U27_A28	OPN	OP11	46	0.41	OP11
188	1i9f-m6_A_U27_A28	OPN	OP11	56	0.33	OP11
189	1i9f-m7_A_U27_A28	OPN	OP11	38	0.51	OP11
190	1i9f-m1_A_A28_C29	AAA	AA00	20	0.44	AA00
191	1i9f-m2_A_A28_C29	AAA	AA00	31	0.42	AA00
192	1i9f-m3_A_A28_C29	AAA	AA08	12	0.48	AA08
193	1i9f-m4_A_A28_C29	AAA	AA00	26	0.40	AA00
194	1i9f-m5_A_A28_C29	AAA	AA00	73	0.28	AA00
195	1i9f-m6_A_A28_C29	AAA	AA00	44	0.35	AA00
196	1i9f-m7_A_A28_C29	AAA	AA04	65	0.40	AA04
197	1i9f-m1_A_C29_A30	AAA	AA00	71	0.27	AA00
198	1i9f-m2_A_C29_A30	AAA	AA00	74	0.19	AA00
199	1i9f-m3_A_C29_A30	AAA	AA00	79	0.19	AA00
200	1i9f-m4_A_C29_A30	AAA	AA00	47	0.35	AA00
201	1i9f-m5_A_C29_A30	AAA	AA00	79	0.21	AA00
202	1i9f-m6_A_C29_A30	AAA	AA00	51	0.33	AA00
203	1i9f-m7_A_C29_A30	AAA	AA08	61	0.38	AA08
204	1i9f-m1_A_A30_G31	AAA	AA00	85	0.27	AA00
205	1i9f-m2_A_A30_G31	AAA	AA00	73	0.28	AA00
206	1i9f-m3_A_A30_G31	AAA	AA00	71	0.19	AA00
207	1i9f-m4_A_A30_G31	AAA	AA00	67	0.25	AA00
208	1i9f-m5_A_A30_G31	AAA	AA00	61	0.23	AA00
209	1i9f-m6_A_A30_G31	AAA	AA00	76	0.25	AA00
210	1i9f-m7_A_A30_G31	AAA	AA00	42	0.28	AA00
211	1i9f-m1_A_G31_G32	AAA	AA00	19	0.39	AA00
212	1i9f-m2_A_G31_G32	AAA	AA00	33	0.40	AA00
213	1i9f-m3_A_G31_G32	AAA	AA00	57	0.27	AA00
214	1i9f-m4_A_G31_G32	AAA	AA00	60	0.30	AA00
215	1i9f-m5_A_G31_G32	AAA	AA00	73	0.30	AA00
216	1i9f-m6_A_G31_G32	AAA	AA00	60	0.31	AA00
217	1i9f-m7_A_G31_G32	NAN	NANT	0	0.53	AA02
218	1i9f-m1_A_G32_C33	AAA	AA00	60	0.28	AA00
219	1i9f-m2_A_G32_C33	AAA	AA00	61	0.29	AA00
220	1i9f-m3_A_G32_C33	AAA	AA00	67	0.26	AA00
221	1i9f-m4_A_G32_C33	AAA	AA00	82	0.18	AA00
222	1i9f-m5_A_G32_C33	AAA	AA00	76	0.26	AA00
223	1i9f-m6_A_G32_C33	AAA	AA00	79	0.22	AA00
224	1i9f-m7_A_G32_C33	AAA	AA00	35	0.41	AA00
225	1i9f-m1_A_C33_C34	AAA	AA00	65	0.23	AA00
226	1i9f-m2_A_C33_C34	AAA	AA00	46	0.35	AA00
227	1i9f-m3_A_C33_C34	AAA	AA00	61	0.31	AA00
228	1i9f-m4_A_C33_C34	AAA	AA00	75	0.23	AA00
229	1i9f-m5_A_C33_C34	AAA	AA00	24	0.34	AA00
230	1i9f-m6_A_C33_C34	AAA	AA00	72	0.22	AA00
231	1i9f-m7_A_C33_C34	AAA	AA00	10	0.39	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 231 detected steps in 7 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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