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Conformers: ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA

Results of the assignment of 270 detected steps in 15 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011i3x-m10_A_G1_G2AAAAA00640.18 AA00
0021i3x-m11_A_G1_G2AAAAA00680.17 AA00
0031i3x-m12_A_G1_G2AAAAA00800.15 AA00
0041i3x-m13_A_G1_G2AAAAA00770.16 AA00
0051i3x-m14_A_G1_G2AAAAA00760.18 AA00
0061i3x-m15_A_G1_G2AAAAA00600.21 AA00
0071i3x-m1_A_G1_G2AAAAA00570.21 AA00
0081i3x-m2_A_G1_G2AAAAA00660.20 AA00
0091i3x-m3_A_G1_G2AAAAA08500.25 AA08
0101i3x-m4_A_G1_G2AAAAA00620.20 AA00
0111i3x-m5_A_G1_G2AAAAA00630.20 AA00
0121i3x-m6_A_G1_G2AAAAA00620.20 AA00
0131i3x-m7_A_G1_G2AAAAA00750.14 AA00
0141i3x-m8_A_G1_G2AAAAA00620.20 AA00
0151i3x-m9_A_G1_G2AAAAA00670.19 AA00
0161i3x-m10_A_G2_C3AAAAA00730.21 AA00
0171i3x-m11_A_G2_C3AAAAA00710.28 AA00
0181i3x-m12_A_G2_C3AAAAA00710.21 AA00
0191i3x-m13_A_G2_C3AAAAA00770.17 AA00
0201i3x-m14_A_G2_C3AAAAA00780.18 AA00
0211i3x-m15_A_G2_C3AAAAA00760.19 AA00
0221i3x-m1_A_G2_C3AAAAA00730.20 AA00
0231i3x-m2_A_G2_C3AAAAA00780.17 AA00
0241i3x-m3_A_G2_C3AAAAA00750.19 AA00
0251i3x-m4_A_G2_C3AAAAA00760.19 AA00
0261i3x-m5_A_G2_C3AAAAA00750.19 AA00
0271i3x-m6_A_G2_C3AAAAA00750.20 AA00
0281i3x-m7_A_G2_C3AAAAA00810.16 AA00
0291i3x-m8_A_G2_C3AAAAA00760.18 AA00
0301i3x-m9_A_G2_C3AAAAA00820.15 AA00
0311i3x-m10_A_C3_U4AAAAA00810.13 AA00
0321i3x-m11_A_C3_U4AAAAA00830.15 AA00
0331i3x-m12_A_C3_U4AAAAA00810.15 AA00
0341i3x-m13_A_C3_U4AAAAA00810.12 AA00
0351i3x-m14_A_C3_U4AAAAA00790.16 AA00
0361i3x-m15_A_C3_U4AAAAA00860.14 AA00
0371i3x-m1_A_C3_U4AAAAA00730.16 AA00
0381i3x-m2_A_C3_U4AAAAA00810.18 AA00
0391i3x-m3_A_C3_U4AAAAA00870.14 AA00
0401i3x-m4_A_C3_U4AAAAA00890.13 AA00
0411i3x-m5_A_C3_U4AAAAA00880.12 AA00
0421i3x-m6_A_C3_U4AAAAA00860.13 AA00
0431i3x-m7_A_C3_U4AAAAA00880.13 AA00
0441i3x-m8_A_C3_U4AAAAA00860.12 AA00
0451i3x-m9_A_C3_U4AAAAA00860.14 AA00
0461i3x-m10_A_U4_G5AAAAA00850.17 AA00
0471i3x-m11_A_U4_G5AAAAA00810.20 AA00
0481i3x-m12_A_U4_G5AAAAA00790.20 AA00
0491i3x-m13_A_U4_G5AAAAA00840.18 AA00
0501i3x-m14_A_U4_G5AAAAA00860.15 AA00
0511i3x-m15_A_U4_G5AAAAA00850.14 AA00
0521i3x-m1_A_U4_G5AAAAA00820.20 AA00
0531i3x-m2_A_U4_G5AAAAA00850.12 AA00
0541i3x-m3_A_U4_G5AAAAA00840.15 AA00
0551i3x-m4_A_U4_G5AAAAA00810.14 AA00
0561i3x-m5_A_U4_G5AAAAA00850.14 AA00
0571i3x-m6_A_U4_G5AAAAA00880.13 AA00
0581i3x-m7_A_U4_G5AAAAA00840.16 AA00
0591i3x-m8_A_U4_G5AAAAA00830.21 AA00
0601i3x-m9_A_U4_G5AAAAA00840.11 AA00
0611i3x-m10_A_G5_G6AAAAA00850.13 AA00
0621i3x-m11_A_G5_G6AAAAA00820.12 AA00
0631i3x-m12_A_G5_G6AAAAA00820.11 AA00
0641i3x-m13_A_G5_G6AAAAA00810.13 AA00
0651i3x-m14_A_G5_G6AAAAA00870.16 AA00
0661i3x-m15_A_G5_G6AAAAA00900.16 AA00
0671i3x-m1_A_G5_G6AAAAA00730.18 AA00
0681i3x-m2_A_G5_G6AAAAA00820.14 AA00
0691i3x-m3_A_G5_G6AAAAA00870.14 AA00
0701i3x-m4_A_G5_G6AAAAA00860.12 AA00
0711i3x-m5_A_G5_G6AAAAA00820.11 AA00
0721i3x-m6_A_G5_G6AAAAA00880.16 AA00
0731i3x-m7_A_G5_G6AAAAA00800.12 AA00
0741i3x-m8_A_G5_G6AAAAA00780.21 AA00
0751i3x-m9_A_G5_G6AAAAA00820.11 AA00
0761i3x-m10_A_G6_C7AAAAA00590.29 AA00
0771i3x-m11_A_G6_C7AAAAA00380.36 AA00
0781i3x-m12_A_G6_C7AAAAA00680.22 AA00
0791i3x-m13_A_G6_C7AAAAA00480.32 AA00
0801i3x-m14_A_G6_C7AAAAA00700.23 AA00
0811i3x-m15_A_G6_C7AAAAA08500.34 AA08
0821i3x-m1_A_G6_C7AAAAA00420.33 AA00
0831i3x-m2_A_G6_C7AAAAA00310.39 AA00
0841i3x-m3_A_G6_C7AAAAA00410.36 AA00
0851i3x-m4_A_G6_C7AAAAA00680.25 AA00
0861i3x-m5_A_G6_C7AAAAA00630.26 AA00
0871i3x-m6_A_G6_C7AAAAA00300.39 AA00
0881i3x-m7_A_G6_C7AAAAA00760.22 AA00
0891i3x-m8_A_G6_C7AAAAA00750.16 AA00
0901i3x-m9_A_G6_C7AAAAA00760.18 AA00
0911i3x-m10_A_C7_U8AAAAA00110.34 AA00
0921i3x-m11_A_C7_U8AAAAA00420.30 AA00
0931i3x-m12_A_C7_U8AAAAA00100.33 AA00
0941i3x-m13_A_C7_U8AAAAA04390.43 AA04
0951i3x-m14_A_C7_U8AAAAA00690.27 AA00
0961i3x-m15_A_C7_U8AAAAA04370.41 AA04
0971i3x-m1_A_C7_U8AAAAA00140.38 AA00
0981i3x-m2_A_C7_U8AAAAA00510.27 AA00
0991i3x-m3_A_C7_U8AAAAA04350.48 AA04
1001i3x-m4_A_C7_U8AAAAA04380.46 AA04
1011i3x-m5_A_C7_U8AAAAA04330.47 AA04
1021i3x-m6_A_C7_U8AAAAA00260.37 AA00
1031i3x-m7_A_C7_U8AAAAA00470.36 AA00
1041i3x-m8_A_C7_U8AAAAA0090.61 AA00
1051i3x-m9_A_C7_U8AAAAA00370.27 AA00
1061i3x-m10_A_U8_G9NANNANT01.19 OP30
1071i3x-m11_A_U8_G9NANNANT01.86 OP01
1081i3x-m12_A_U8_G9ICLIC01460.36 IC01
1091i3x-m13_A_U8_G9ICLIC01580.42 IC01
1101i3x-m14_A_U8_G9ICLIC02390.56 IC02
1111i3x-m15_A_U8_G9ICLIC01390.41 IC01
1121i3x-m1_A_U8_G9NANNANT01.08 IC03
1131i3x-m2_A_U8_G9ICLIC02480.54 IC02
1141i3x-m3_A_U8_G9NANNANT01.12 OP30
1151i3x-m4_A_U8_G9ICLIC01340.44 IC01
1161i3x-m5_A_U8_G9ICLIC01440.40 IC01
1171i3x-m6_A_U8_G9NANNANT00.74 IC02
1181i3x-m7_A_U8_G9NANNANT00.90 IC02
1191i3x-m8_A_U8_G9NANNANT00.63 AB2S
1201i3x-m9_A_U8_G9NANNANT00.84 AB2S
1211i3x-m10_A_G9_U10OPNOP18260.70 OP18
1221i3x-m11_A_G9_U10NANNANT01.63 OP18
1231i3x-m12_A_G9_U10NANNANT00.94 OP18
1241i3x-m13_A_G9_U10NANNANT00.73 OP18
1251i3x-m14_A_G9_U10NANNANT00.97 OP18
1261i3x-m15_A_G9_U10NANNANT00.93 BB20
1271i3x-m1_A_G9_U10NANNANT00.99 OP18
1281i3x-m2_A_G9_U10OPNOP18360.49 OP18
1291i3x-m3_A_G9_U10NANNANT00.73 OP18
1301i3x-m4_A_G9_U10NANNANT00.88 OP18
1311i3x-m5_A_G9_U10NANNANT00.90 BB20
1321i3x-m6_A_G9_U10NANNANT00.88 OP18
1331i3x-m7_A_G9_U10NANNANT00.95 OP18
1341i3x-m8_A_G9_U10NANNANT01.34 OP18
1351i3x-m9_A_G9_U10NANNANT02.03 ZZS2
1361i3x-m10_A_U10_U11NANNANT01.60 OP22
1371i3x-m11_A_U10_U11NANNANT00.78 OP20
1381i3x-m12_A_U10_U11NANNANT00.51 IC06
1391i3x-m13_A_U10_U11NANNANT00.94 OP20
1401i3x-m14_A_U10_U11NANNANT01.05 OP20
1411i3x-m15_A_U10_U11NANNANT00.54 IC06
1421i3x-m1_A_U10_U11NANNANT00.55 IC06
1431i3x-m2_A_U10_U11NANNANT01.58 OP22
1441i3x-m3_A_U10_U11NANNANT01.07 OP20
1451i3x-m4_A_U10_U11NANNANT00.51 IC06
1461i3x-m5_A_U10_U11NANNANT00.55 IC06
1471i3x-m6_A_U10_U11NANNANT00.63 IC06
1481i3x-m7_A_U10_U11NANNANT00.39 IC06
1491i3x-m8_A_U10_U11NANNANT01.16 IC06
1501i3x-m9_A_U10_U11NANNANT00.61 IC06
1511i3x-m10_A_U11_C12NANNANT01.33 ZZ02
1521i3x-m11_A_U11_C12NANNANT01.15 BB07
1531i3x-m12_A_U11_C12NANNANT01.12 BA17
1541i3x-m13_A_U11_C12NANNANT01.45 ZZ02
1551i3x-m14_A_U11_C12OPNOP22250.46 OP22
1561i3x-m15_A_U11_C12NANNANT01.13 BB07
1571i3x-m1_A_U11_C12NANNANT01.30 ZZ02
1581i3x-m2_A_U11_C12NANNANT01.20 ZZ02
1591i3x-m3_A_U11_C12NANNANT01.33 ZZ02
1601i3x-m4_A_U11_C12NANNANT01.30 ZZ02
1611i3x-m5_A_U11_C12NANNANT01.14 BA17
1621i3x-m6_A_U11_C12NANNANT01.30 ZZ02
1631i3x-m7_A_U11_C12NANNANT00.60 OP22
1641i3x-m8_A_U11_C12NANNANT00.65 OP22
1651i3x-m9_A_U11_C12NANNANT01.16 BB07
1661i3x-m10_A_C12_G13B-ABA08390.43 BA08
1671i3x-m11_A_C12_G13B-ABA08440.38 BA08
1681i3x-m12_A_C12_G13NANNANT00.35 BA08
1691i3x-m13_A_C12_G13B-ABA08480.40 BA08
1701i3x-m14_A_C12_G13NANNANT01.28 ZZ02
1711i3x-m15_A_C12_G13B-ABA0590.50 BA05
1721i3x-m1_A_C12_G13B-ABA08420.46 BA08
1731i3x-m2_A_C12_G13AAAAA04300.41 AA04
1741i3x-m3_A_C12_G13AAAAA04370.39 AA04
1751i3x-m4_A_C12_G13AAAAA04350.39 AA04
1761i3x-m5_A_C12_G13B-ABA0590.51 BA05
1771i3x-m6_A_C12_G13B-ABA08360.47 BA08
1781i3x-m7_A_C12_G13NANNANT01.30 ZZ02
1791i3x-m8_A_C12_G13NANNANT01.32 ZZ02
1801i3x-m9_A_C12_G13B-ABA08350.36 BA08
1811i3x-m10_A_G13_C14AAwAA01810.33 AA01
1821i3x-m11_A_G13_C14NANNANT00.48 AA10
1831i3x-m12_A_G13_C14AAAAA00460.20 AA00
1841i3x-m13_A_G13_C14AAwAA01840.30 AA01
1851i3x-m14_A_G13_C14NANNANT00.55 AA10
1861i3x-m15_A_G13_C14AAAAA00640.22 AA00
1871i3x-m1_A_G13_C14AAwAA01710.33 AA01
1881i3x-m2_A_G13_C14AAAAA00670.18 AA00
1891i3x-m3_A_G13_C14AAAAA00590.15 AA00
1901i3x-m4_A_G13_C14AAwAA01830.14 AA01
1911i3x-m5_A_G13_C14AAwAA01860.23 AA01
1921i3x-m6_A_G13_C14AAwAA01700.36 AA01
1931i3x-m7_A_G13_C14NANNANT00.57 AA10
1941i3x-m8_A_G13_C14AAAAA00550.22 AA00
1951i3x-m9_A_G13_C14NANNANT00.48 AA10
1961i3x-m10_A_C14_C15AAAAA00860.14 AA00
1971i3x-m11_A_C14_C15AAAAA00460.18 AA00
1981i3x-m12_A_C14_C15AAAAA00640.25 AA00
1991i3x-m13_A_C14_C15AAAAA00790.13 AA00
2001i3x-m14_A_C14_C15AAAAA00210.26 AA00
2011i3x-m15_A_C14_C15AAAAA00710.22 AA00
2021i3x-m1_A_C14_C15AAAAA00730.15 AA00
2031i3x-m2_A_C14_C15AAAAA00790.19 AA00
2041i3x-m3_A_C14_C15AAAAA00760.20 AA00
2051i3x-m4_A_C14_C15AAAAA00640.17 AA00
2061i3x-m5_A_C14_C15AAAAA00790.13 AA00
2071i3x-m6_A_C14_C15AAAAA00800.17 AA00
2081i3x-m7_A_C14_C15AAAAA00220.27 AA00
2091i3x-m8_A_C14_C15AAAAA00690.24 AA00
2101i3x-m9_A_C14_C15AAAAA00490.19 AA00
2111i3x-m10_A_C15_A16AAAAA00820.18 AA00
2121i3x-m11_A_C15_A16AAAAA00760.20 AA00
2131i3x-m12_A_C15_A16AAAAA00800.17 AA00
2141i3x-m13_A_C15_A16AAAAA00780.20 AA00
2151i3x-m14_A_C15_A16AAAAA00830.18 AA00
2161i3x-m15_A_C15_A16AAAAA00860.14 AA00
2171i3x-m1_A_C15_A16AAAAA00700.22 AA00
2181i3x-m2_A_C15_A16AAAAA00860.14 AA00
2191i3x-m3_A_C15_A16AAAAA00850.15 AA00
2201i3x-m4_A_C15_A16AAAAA00660.23 AA00
2211i3x-m5_A_C15_A16AAAAA00780.20 AA00
2221i3x-m6_A_C15_A16AAAAA00640.26 AA00
2231i3x-m7_A_C15_A16AAAAA00810.18 AA00
2241i3x-m8_A_C15_A16AAAAA00830.16 AA00
2251i3x-m9_A_C15_A16AAAAA00830.19 AA00
2261i3x-m10_A_A16_G17AAAAA00770.17 AA00
2271i3x-m11_A_A16_G17AAAAA00820.12 AA00
2281i3x-m12_A_A16_G17AAAAA00740.18 AA00
2291i3x-m13_A_A16_G17AAAAA00760.16 AA00
2301i3x-m14_A_A16_G17AAAAA00760.17 AA00
2311i3x-m15_A_A16_G17AAAAA00740.19 AA00
2321i3x-m1_A_A16_G17AAAAA00740.19 AA00
2331i3x-m2_A_A16_G17AAAAA00730.20 AA00
2341i3x-m3_A_A16_G17AAAAA00740.18 AA00
2351i3x-m4_A_A16_G17AAAAA00770.18 AA00
2361i3x-m5_A_A16_G17AAAAA00760.17 AA00
2371i3x-m6_A_A16_G17AAAAA00730.19 AA00
2381i3x-m7_A_A16_G17AAAAA00760.16 AA00
2391i3x-m8_A_A16_G17AAAAA00750.17 AA00
2401i3x-m9_A_A16_G17AAAAA00770.18 AA00
2411i3x-m10_A_G17_C18AAAAA00770.17 AA00
2421i3x-m11_A_G17_C18AAAAA00850.12 AA00
2431i3x-m12_A_G17_C18AAAAA00680.24 AA00
2441i3x-m13_A_G17_C18AAAAA00740.19 AA00
2451i3x-m14_A_G17_C18AAAAA00790.16 AA00
2461i3x-m15_A_G17_C18AAAAA00730.19 AA00
2471i3x-m1_A_G17_C18AAAAA00750.17 AA00
2481i3x-m2_A_G17_C18AAAAA00730.21 AA00
2491i3x-m3_A_G17_C18AAAAA00770.17 AA00
2501i3x-m4_A_G17_C18AAAAA00730.19 AA00
2511i3x-m5_A_G17_C18AAAAA00750.20 AA00
2521i3x-m6_A_G17_C18AAAAA00700.19 AA00
2531i3x-m7_A_G17_C18AAAAA00770.19 AA00
2541i3x-m8_A_G17_C18AAAAA00800.17 AA00
2551i3x-m9_A_G17_C18AAAAA00750.20 AA00
2561i3x-m10_A_C18_C19AAAAA00890.16 AA00
2571i3x-m11_A_C18_C19AAAAA00830.20 AA00
2581i3x-m12_A_C18_C19AAAAA00890.14 AA00
2591i3x-m13_A_C18_C19AAAAA00880.14 AA00
2601i3x-m14_A_C18_C19AAAAA00900.12 AA00
2611i3x-m15_A_C18_C19AAAAA00870.14 AA00
2621i3x-m1_A_C18_C19AAAAA00850.17 AA00
2631i3x-m2_A_C18_C19AAAAA00840.19 AA00
2641i3x-m3_A_C18_C19AAAAA00730.23 AA00
2651i3x-m4_A_C18_C19AAAAA00750.23 AA00
2661i3x-m5_A_C18_C19AAAAA00860.13 AA00
2671i3x-m6_A_C18_C19AAAAA00800.22 AA00
2681i3x-m7_A_C18_C19AAAAA00880.14 AA00
2691i3x-m8_A_C18_C19AAAAA00900.13 AA00
2701i3x-m9_A_C18_C19AAAAA00850.16 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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