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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF INTRON ENDONUCLEASE I-TEVI WITH ITS SUBSTRATE

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011i3j_B_DT1_DT2BBBBB00680.30 BB00
021i3j_B_DT2_DC3BBBBB00710.16 BB00
031i3j_B_DC3_DT4miBBB15600.31 BB15
041i3j_B_DT4_DT5BBwBB02850.16 BB02
051i3j_B_DT5_DG6BBBBB00370.42 BB00
061i3j_B_DG6_DG7BB2BB07650.17 BB07
071i3j_B_DG7_DG8B12BB04550.26 BB04
081i3j_B_DG8_DT9BBBBB00530.31 BB00
091i3j_B_DT9_DC10BBwBB03630.36 BB03
101i3j_B_DC10_DT11BBBBB00530.36 BB00
111i3j_B_DT11_DA12BBBBB00850.23 BB00
121i3j_B_DA12_DC13BBwBB02730.18 BB02
131i3j_B_DC13_DC14BBwBB02710.27 BB02
141i3j_B_DC14_DG15BBBBB00620.40 BB00
151i3j_B_DG15_DT16BBBBB00770.29 BB00
161i3j_B_DT16_DT17BBwBB02860.14 BB02
171i3j_B_DT17_DT18BBBBB00390.21 BB00
181i3j_B_DT18_DA19B12BB04370.25 BB04
191i3j_B_DA19_DA20BBBBB00420.30 BB00
201i3j_B_DA20_DT21BBwBB02390.35 BB02
211i3j_C_DA31_DA32SYNBBS1610.23 BBS1
221i3j_C_DA32_DT33BBwBB02100.32 BB02
231i3j_C_DT33_DT34BBBBB00550.31 BB00
241i3j_C_DT34_DA35BBBBB00660.33 BB00
251i3j_C_DA35_DA36BBBBB00450.20 BB00
261i3j_C_DA36_DA37B12BB04410.24 BB04
271i3j_C_DA37_DC38BBwBB02890.12 BB02
281i3j_C_DC38_DG39BBBBB00550.22 BB00
291i3j_C_DG39_DG40BBwBB02520.30 BB02
301i3j_C_DG40_DT41BBBBB00280.49 BB00
311i3j_C_DT41_DA42BBBBB00670.34 BB00
321i3j_C_DA42_DG43BBBBB00580.17 BB00
331i3j_C_DG43_DA44B12BB04450.21 BB04
341i3j_C_DA44_DC45BBwBB02820.21 BB02
351i3j_C_DC45_DC46miBBB15640.28 BB15
361i3j_C_DC46_DC47BBBBB00770.22 BB00
371i3j_C_DC47_DA48B12BB04730.25 BB04
381i3j_C_DA48_DA49BBBBB00500.28 BB00
391i3j_C_DA49_DG50B12BB04600.21 BB04
401i3j_C_DG50_DA51BBwBB02740.24 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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