Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
2.4 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMIDINE FORM
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1i2x_A_G1_C2 | AAA | AA00 | 67 | 0.17 |
| 02 | 1i2x_A_C2_G3 | AAA | AA00 | 48 | 0.33 |
| 03 | 1i2x_A_G3_DA4 | AAA | AA00 | 34 | 0.26 |
| 04 | 1i2x_A_DA4_DT5 | A-B | AB01 | 78 | 0.31 |
| 05 | 1i2x_A_DT5_DA6 | BBB | BB00 | 93 | 0.15 |
| 06 | 1i2x_A_DA6_DT7 | BBB | BB00 | 71 | 0.22 |
| 07 | 1i2x_A_DT7_A8 | NAN | NANT | 0 | 0.72 |
| 08 | 1i2x_A_A8_C9 | OPN | OP17 | 33 | 0.41 |
| 09 | 1i2x_A_C9_G10 | AAA | AA08 | 46 | 0.21 |
| 10 | 1i2x_A_G10_U11 | AAA | AA08 | 68 | 0.18 |
| 11 | 1i2x_B_G21_C22 | AAA | AA04 | 84 | 0.27 |
| 12 | 1i2x_B_C22_G23 | AAA | AA00 | 10 | 0.29 |
| 13 | 1i2x_B_G23_DA24 | AAA | AA00 | 86 | 0.18 |
| 14 | 1i2x_B_DA24_DT25 | A-B | AB01 | 79 | 0.31 |
| 15 | 1i2x_B_DT25_DA26 | BBB | BB00 | 95 | 0.18 |
| 16 | 1i2x_B_DA26_DT27 | NAN | NANT | 0 | 0.24 |
| 17 | 1i2x_B_DT27_A28 | NAN | NANT | 0 | 0.87 |
| 18 | 1i2x_B_A28_C29 | NAN | NANT | 0 | 0.17 |
| 19 | 1i2x_B_C29_G30 | AAA | AA00 | 78 | 0.22 |
| 20 | 1i2x_B_G30_U31 | AAw | AA01 | 28 | 0.40 |
| 21 | 1i2x_D_G101_C102 | AAA | AA00 | 62 | 0.31 |
| 22 | 1i2x_D_C102_G103 | AAA | AA00 | 59 | 0.30 |
| 23 | 1i2x_D_G103_DA104 | AAw | AA06 | 78 | 0.20 |
| 24 | 1i2x_D_DA104_DT105 | AAA | AA03 | 49 | 0.36 |
| 25 | 1i2x_D_DT105_DA106 | A-B | AB01 | 28 | 0.46 |
| 26 | 1i2x_D_DA106_DT107 | NAN | NANT | 0 | 0.22 |
| 27 | 1i2x_D_DT107_A108 | NAN | NANT | 0 | 1.19 |
| 28 | 1i2x_D_A108_C109 | NAN | NANT | 0 | 1.33 |
| 29 | 1i2x_D_C109_G110 | NAN | NANT | 0 | 0.46 |
| 30 | 1i2x_D_G110_U111 | AAA | AA00 | 70 | 0.21 |
| 31 | 1i2x_C_G121_C122 | AAA | AA08 | 78 | 0.22 |
| 32 | 1i2x_C_C122_G123 | AAA | AA04 | 39 | 0.43 |
| 33 | 1i2x_C_G123_DA124 | AAA | AA04 | 80 | 0.24 |
| 34 | 1i2x_C_DA124_DT125 | AAA | AA03 | 71 | 0.25 |
| 35 | 1i2x_C_DT125_DA126 | A-B | AB01 | 43 | 0.36 |
| 36 | 1i2x_C_DA126_DT127 | BBB | BB00 | 53 | 0.39 |
| 37 | 1i2x_C_DT127_A128 | NAN | NANT | 0 | 1.45 |
| 38 | 1i2x_C_A128_C129 | NAN | NANT | 0 | 0.92 |
| 39 | 1i2x_C_C129_G130 | AAA | AA08 | 65 | 0.28 |
| 40 | 1i2x_C_G130_U131 | AAA | AA00 | 62 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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