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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA

Results of the assignment of 43 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011hys_E_U854_C855NANNANT01.13 BB01
021hys_E_C855_A856AAAAA00230.29 AA00
031hys_E_A856_G857AAAAA00720.17 AA00
041hys_E_G857_C858AAAAA00660.24 AA00
051hys_E_C858_C859AAAAA00280.32 AA00
061hys_E_C859_A860AAAAA04760.27 AA04
071hys_E_A860_C861AAAAA00550.38 AA00
081hys_E_C861_U862AAAAA08580.32 AA08
091hys_E_U862_U863AAAAA04730.32 AA04
101hys_E_U863_U864AAAAA00460.36 AA00
111hys_E_U864_U865AAAAA00450.35 AA00
121hys_E_U865_U866AAAAA00570.26 AA00
131hys_E_U866_A867AAAAA03100.52 AA03
141hys_E_A867_A868AAAAA08380.49 AA08
151hys_E_A868_A869AAAAA03280.61 AA03
161hys_E_A869_A870AAAAA00660.22 AA00
171hys_E_A870_G871AAAAA08600.34 AA08
181hys_E_G871_A872AAAAA00490.30 AA00
191hys_E_A872_A873AAAAA00770.18 AA00
201hys_E_A873_A874AAAAA00460.32 AA00
211hys_E_A874_A875AAAAA08770.44 AA08
221hys_E_A875_G876AAAAA08660.35 AA08
231hys_F_DC878_DT879NANNANT00.77 BB15
241hys_F_DT879_DT880NANNANT00.57 BB17
251hys_F_DT880_DT881NANNANT00.60 BB04
261hys_F_DT881_DT882BBwBB02130.26 BB02
271hys_F_DT882_DC883NANNANT00.41 BB15
281hys_F_DC883_DT884NANNANT00.68 BB03
291hys_F_DT884_DT885NANNANT00.54 BB16
301hys_F_DT885_DT886NANNANT00.51 BB00
311hys_F_DT886_DT887BBBBB00640.31 BB00
321hys_F_DT887_DA888BBBBB00280.42 BB00
331hys_F_DA888_DA889BBBBB00530.24 BB00
341hys_F_DA889_DA890BBBBB00630.29 BB00
351hys_F_DA890_DA891NANNANT00.94 BB16
361hys_F_DA891_DA892NANNANT00.35 BB17
371hys_F_DA892_DG893NANNANT00.60 BB03
381hys_F_DG893_DT894NANNANT00.53 BB02
391hys_F_DT894_DG895NANNANT00.53 AA00
401hys_F_DG895_DG896NANNANT00.34 AA04
411hys_F_DG896_DC897NANNANT00.39 AA03
421hys_F_DC897_DT898AAAAA0080.47 AA00
431hys_F_DT898_DG899AAAAA02150.44 AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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