DNATCO v4.1: results

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT

Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1hvu_C_A4_G5	AAA	AA00	73	0.20	AA00
002	1hvu_C_G5_A6	AAA	AA08	13	0.44	AA08
003	1hvu_C_A6_U7	NAN	NANT	0	0.56	IC04
004	1hvu_C_U7_U8	AAA	AA00	16	0.51	AA00
005	1hvu_C_U8_C9	AAA	AA00	61	0.18	AA00
006	1hvu_C_C9_C10	AAA	AA00	89	0.14	AA00
007	1hvu_C_C10_G11	AAA	AA00	83	0.19	AA00
008	1hvu_C_G11_U12	NAN	NANT	0	1.76	OP01
009	1hvu_C_U12_U13	AAw	AA05	19	0.46	AA05
010	1hvu_C_U13_U14	NAN	NANT	0	0.88	OP30
011	1hvu_C_U14_U15	AAA	AA00	87	0.22	AA00
012	1hvu_C_U15_C16	AAA	AA00	82	0.22	AA00
013	1hvu_C_C16_A17	AAA	AA00	65	0.21	AA00
014	1hvu_C_A17_G18	NAN	NANT	0	0.42	AB04
015	1hvu_C_G18_U19	NAN	NANT	0	0.72	AA01
016	1hvu_C_U19_C20	NAN	NANT	0	0.59	AA06
017	1hvu_C_C20_G21	AAw	AA01	48	0.24	AA01
018	1hvu_C_G21_G22	AAw	AA01	67	0.25	AA01
019	1hvu_C_G22_G23	AAA	AA00	80	0.19	AA00
020	1hvu_C_G23_A24	NAN	NANT	0	0.65	AA09
021	1hvu_C_A24_A25	NAN	NANT	0	1.57	IC04
022	1hvu_C_A25_A26	NAN	NANT	0	1.77	AA11
023	1hvu_C_A27_A28	NAN	NANT	0	1.01	IC03
024	1hvu_C_A28_C29	NAN	NANT	0	0.73	AA10
025	1hvu_C_C29_U30	AAA	AA00	76	0.19	AA00
026	1hvu_C_U30_G31	AAA	AA00	85	0.18	AA00
027	1hvu_C_G31_A32	AAA	AA00	89	0.17	AA00
028	1hvu_C_A32_A33	AAw	AA01	52	0.24	AA01
029	1hvu_F_A4_G5	AAA	AA00	73	0.20	AA00
030	1hvu_F_G5_A6	AAA	AA08	13	0.44	AA08
031	1hvu_F_A6_U7	NAN	NANT	0	0.56	IC04
032	1hvu_F_U7_U8	AAA	AA00	16	0.51	AA00
033	1hvu_F_U8_C9	AAA	AA00	61	0.18	AA00
034	1hvu_F_C9_C10	AAA	AA00	89	0.14	AA00
035	1hvu_F_C10_G11	AAA	AA00	83	0.19	AA00
036	1hvu_F_G11_U12	NAN	NANT	0	1.76	OP01
037	1hvu_F_U12_U13	AAw	AA05	19	0.46	AA05
038	1hvu_F_U13_U14	NAN	NANT	0	0.88	OP30
039	1hvu_F_U14_U15	AAA	AA00	87	0.22	AA00
040	1hvu_F_U15_C16	AAA	AA00	82	0.22	AA00
041	1hvu_F_C16_A17	AAA	AA00	65	0.21	AA00
042	1hvu_F_A17_G18	NAN	NANT	0	0.42	AB04
043	1hvu_F_G18_U19	NAN	NANT	0	0.72	AA01
044	1hvu_F_U19_C20	NAN	NANT	0	0.59	AA06
045	1hvu_F_C20_G21	AAw	AA01	48	0.24	AA01
046	1hvu_F_G21_G22	AAw	AA01	67	0.25	AA01
047	1hvu_F_G22_G23	AAA	AA00	80	0.19	AA00
048	1hvu_F_G23_A24	NAN	NANT	0	0.65	AA09
049	1hvu_F_A24_A25	NAN	NANT	0	1.57	IC04
050	1hvu_F_A25_A26	NAN	NANT	0	1.77	AA11
051	1hvu_F_A27_A28	NAN	NANT	0	1.01	IC03
052	1hvu_F_A28_C29	NAN	NANT	0	0.73	AA10
053	1hvu_F_C29_U30	AAA	AA00	76	0.19	AA00
054	1hvu_F_U30_G31	AAA	AA00	85	0.18	AA00
055	1hvu_F_G31_A32	AAA	AA00	89	0.17	AA00
056	1hvu_F_A32_A33	AAw	AA01	51	0.24	AA01
057	1hvu_I_A4_G5	AAA	AA00	73	0.20	AA00
058	1hvu_I_G5_A6	AAA	AA08	13	0.44	AA08
059	1hvu_I_A6_U7	NAN	NANT	0	0.56	IC04
060	1hvu_I_U7_U8	AAA	AA00	16	0.51	AA00
061	1hvu_I_U8_C9	AAA	AA00	61	0.18	AA00
062	1hvu_I_C9_C10	AAA	AA00	89	0.14	AA00
063	1hvu_I_C10_G11	AAA	AA00	83	0.19	AA00
064	1hvu_I_G11_U12	NAN	NANT	0	1.76	OP01
065	1hvu_I_U12_U13	AAw	AA05	19	0.46	AA05
066	1hvu_I_U13_U14	NAN	NANT	0	0.88	OP30
067	1hvu_I_U14_U15	AAA	AA00	87	0.22	AA00
068	1hvu_I_U15_C16	AAA	AA00	82	0.22	AA00
069	1hvu_I_C16_A17	AAA	AA00	65	0.21	AA00
070	1hvu_I_A17_G18	NAN	NANT	0	0.42	AB04
071	1hvu_I_G18_U19	NAN	NANT	0	0.72	AA01
072	1hvu_I_U19_C20	NAN	NANT	0	0.59	AA06
073	1hvu_I_C20_G21	AAw	AA01	48	0.24	AA01
074	1hvu_I_G21_G22	AAw	AA01	67	0.25	AA01
075	1hvu_I_G22_G23	AAA	AA00	80	0.19	AA00
076	1hvu_I_G23_A24	NAN	NANT	0	0.65	AA09
077	1hvu_I_A24_A25	NAN	NANT	0	1.57	IC04
078	1hvu_I_A25_A26	NAN	NANT	0	1.77	AA11
079	1hvu_I_A27_A28	NAN	NANT	0	1.01	IC03
080	1hvu_I_A28_C29	NAN	NANT	0	0.73	AA10
081	1hvu_I_C29_U30	AAA	AA00	76	0.19	AA00
082	1hvu_I_U30_G31	AAA	AA00	85	0.18	AA00
083	1hvu_I_G31_A32	AAA	AA00	89	0.17	AA00
084	1hvu_I_A32_A33	AAw	AA01	51	0.24	AA01
085	1hvu_L_A4_G5	AAA	AA00	73	0.20	AA00
086	1hvu_L_G5_A6	AAA	AA08	13	0.44	AA08
087	1hvu_L_A6_U7	NAN	NANT	0	0.56	IC04
088	1hvu_L_U7_U8	AAA	AA00	16	0.51	AA00
089	1hvu_L_U8_C9	AAA	AA00	61	0.18	AA00
090	1hvu_L_C9_C10	AAA	AA00	89	0.14	AA00
091	1hvu_L_C10_G11	AAA	AA00	83	0.19	AA00
092	1hvu_L_G11_U12	NAN	NANT	0	1.76	OP01
093	1hvu_L_U12_U13	AAw	AA05	19	0.46	AA05
094	1hvu_L_U13_U14	NAN	NANT	0	0.88	OP30
095	1hvu_L_U14_U15	AAA	AA00	87	0.22	AA00
096	1hvu_L_U15_C16	AAA	AA00	82	0.22	AA00
097	1hvu_L_C16_A17	AAA	AA00	65	0.21	AA00
098	1hvu_L_A17_G18	NAN	NANT	0	0.42	AB04
099	1hvu_L_G18_U19	NAN	NANT	0	0.72	AA01
100	1hvu_L_U19_C20	NAN	NANT	0	0.59	AA06
101	1hvu_L_C20_G21	AAw	AA01	47	0.24	AA01
102	1hvu_L_G21_G22	AAw	AA01	67	0.25	AA01
103	1hvu_L_G22_G23	AAA	AA00	79	0.19	AA00
104	1hvu_L_G23_A24	NAN	NANT	0	0.65	AA09
105	1hvu_L_A24_A25	NAN	NANT	0	1.57	IC04
106	1hvu_L_A25_A26	NAN	NANT	0	1.77	AA11
107	1hvu_L_A27_A28	NAN	NANT	0	1.01	IC03
108	1hvu_L_A28_C29	NAN	NANT	0	0.73	AA10
109	1hvu_L_C29_U30	AAA	AA00	76	0.19	AA00
110	1hvu_L_U30_G31	AAA	AA00	85	0.18	AA00
111	1hvu_L_G31_A32	AAA	AA00	89	0.17	AA00
112	1hvu_L_A32_A33	AAw	AA01	52	0.24	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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