Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1huz_T_DA4_DG5 | B-A | BA05 | 34 | 0.29 |
| 02 | 1huz_T_DG5_DG6 | BBB | BB00 | 30 | 0.30 |
| 03 | 1huz_T_DG6_DC7 | B12 | BB04 | 22 | 0.31 |
| 04 | 1huz_T_DC7_DG8 | BBB | BB00 | 65 | 0.21 |
| 05 | 1huz_T_DG8_DT9 | BBB | BB00 | 46 | 0.31 |
| 06 | 1huz_T_DT9_DC10 | B-A | BA01 | 37 | 0.30 |
| 07 | 1huz_T_DC10_DG11 | A-B | AB03 | 69 | 0.28 |
| 08 | 1huz_P_DC1_DG2 | NAN | NANT | 0 | 0.66 |
| 09 | 1huz_P_DG2_DA3 | B-A | BA05 | 54 | 0.32 |
| 10 | 1huz_P_DA3_DC4 | B-A | BA05 | 73 | 0.28 |
| 11 | 1huz_P_DC4_DG5 | BBB | BB01 | 23 | 0.36 |
| 12 | 1huz_P_DG5_DC6 | B-A | BA05 | 24 | 0.41 |
| 13 | 1huz_P_DC6_DC7 | AAA | AA00 | 28 | 0.32 |
| 14 | 1huz_P_DC7_DT8 | NAN | NANT | 0 | 0.59 |
| 15 | 1huz_C_DA4_DG5 | BBB | BB00 | 21 | 0.42 |
| 16 | 1huz_C_DG5_DG6 | BBB | BB00 | 67 | 0.27 |
| 17 | 1huz_C_DG6_DC7 | B12 | BB04 | 22 | 0.37 |
| 18 | 1huz_C_DC7_DG8 | BBB | BB00 | 47 | 0.23 |
| 19 | 1huz_C_DG8_DT9 | BBB | BB00 | 77 | 0.24 |
| 20 | 1huz_C_DT9_DC10 | B-A | BA01 | 17 | 0.23 |
| 21 | 1huz_C_DC10_DG11 | A-B | AB03 | 59 | 0.26 |
| 22 | 1huz_D_DC1_DG2 | NAN | NANT | 0 | 0.70 |
| 23 | 1huz_D_DG2_DA3 | BBB | BB01 | 38 | 0.24 |
| 24 | 1huz_D_DA3_DC4 | B-A | BA05 | 60 | 0.29 |
| 25 | 1huz_D_DC4_DG5 | BBB | BB01 | 23 | 0.34 |
| 26 | 1huz_D_DG5_DC6 | B-A | BA05 | 27 | 0.40 |
| 27 | 1huz_D_DC6_DC7 | AAA | AA00 | 14 | 0.29 |
| 28 | 1huz_D_DC7_DT8 | AAA | AA03 | 14 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|