DNATCO v4.1: results

STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1hq1_B_G130_G131	AAA	AA00	87	0.14	AA00
02	1hq1_B_G131_C132	AAA	AA00	95	0.09	AA00
03	1hq1_B_C132_U133	AAA	AA00	93	0.14	AA00
04	1hq1_B_U133_C134	AAA	AA00	96	0.10	AA00
05	1hq1_B_C134_U135	AAA	AA00	94	0.12	AA00
06	1hq1_B_U135_G136	AAA	AA00	87	0.13	AA00
07	1hq1_B_G136_U137	AAA	AA08	88	0.20	AA08
08	1hq1_B_U137_U138	AAA	AA00	92	0.17	AA00
09	1hq1_B_U138_U139	AAA	AA00	58	0.26	AA00
10	1hq1_B_U139_A140	NAN	NANT	0	1.38	OP17
11	1hq1_B_A140_C141	AAA	AA00	45	0.35	AA00
12	1hq1_B_C141_C142	AAA	AA00	40	0.45	AA00
13	1hq1_B_C142_A143	NAN	NANT	0	0.57	OP06
14	1hq1_B_A143_G144	OPN	OP11	41	0.79	OP11
15	1hq1_B_G144_G145	AAA	AA00	55	0.24	AA00
16	1hq1_B_G145_U146	AAA	AA00	85	0.18	AA00
17	1hq1_B_U146_C147	AAw	AA01	66	0.44	AA01
18	1hq1_B_C147_A148	AAu	AA13	66	0.20	AA13
19	1hq1_B_A148_G149	AAA	AA08	53	0.48	AA08
20	1hq1_B_G149_G150	AAA	AA08	81	0.29	AA08
21	1hq1_B_G150_U151	AAA	AA00	87	0.28	AA00
22	1hq1_B_U151_C152	AAA	AA00	88	0.14	AA00
23	1hq1_B_C152_C153	AAA	AA00	81	0.22	AA00
24	1hq1_B_C153_G154	AAA	AA00	86	0.21	AA00
25	1hq1_B_G154_A155	OPN	OP03	53	0.11	OP03
26	1hq1_B_A155_A156	AAA	AA08	58	0.28	AA08
27	1hq1_B_A156_A157	AAA	AA00	16	0.37	AA00
28	1hq1_B_A157_G158	AAw	AA05	89	0.18	AA05
29	1hq1_B_G158_G159	AAw	AA01	67	0.27	AA01
30	1hq1_B_G159_A160	AAA	AA00	70	0.25	AA00
31	1hq1_B_A160_A161	AAA	AA00	76	0.16	AA00
32	1hq1_B_A161_G162	AAA	AA00	29	0.46	AA00
33	1hq1_B_G162_C163	AAu	AA12	90	0.43	AA12
34	1hq1_B_C163_A164	AAA	AA00	83	0.22	AA00
35	1hq1_B_A164_G165	AAA	AA00	59	0.34	AA00
36	1hq1_B_G165_C166	AAA	AA00	71	0.25	AA00
37	1hq1_B_C166_C167	AAA	AA00	86	0.20	AA00
38	1hq1_B_C167_A168	AAA	AA00	83	0.23	AA00
39	1hq1_B_A168_A169	AAA	AA00	23	0.42	AA00
40	1hq1_B_A169_G170	AAA	AA00	78	0.12	AA00
41	1hq1_B_G170_G171	AAA	AA00	60	0.27	AA00
42	1hq1_B_G171_C172	AAA	AA00	84	0.21	AA00
43	1hq1_B_C172_A173	AAw	AA01	91	0.11	AA01
44	1hq1_B_A173_G174	AAA	AA00	76	0.22	AA00
45	1hq1_B_G174_A175	AAA	AA00	97	0.11	AA00
46	1hq1_B_A175_G176	AAA	AA00	91	0.07	AA00
47	1hq1_B_G176_C177	AAA	AA00	81	0.14	AA00
48	1hq1_B_C177_CCC178	AAA	AA00	51	0.28	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible