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Conformers: ABBIImiBZICOPNSYNN
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CHIMERIC RNA/DNA HAIRPIN

Results of the assignment of 110 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011hoq-m10_A_G1_G2AAAAA00500.31 AA00
0021hoq-m1_A_G1_G2AAAAA00530.30 AA00
0031hoq-m2_A_G1_G2AAuAA12350.37 AA12
0041hoq-m3_A_G1_G2AAAAA00330.36 AA00
0051hoq-m4_A_G1_G2AAuAA12330.38 AA12
0061hoq-m5_A_G1_G2AAuAA12330.38 AA12
0071hoq-m6_A_G1_G2AAuAA12340.37 AA12
0081hoq-m7_A_G1_G2AAuAA12410.33 AA12
0091hoq-m8_A_G1_G2AAuAA12360.36 AA12
0101hoq-m9_A_G1_G2AAuAA12340.37 AA12
0111hoq-m10_A_G2_A3AAAAA00900.28 AA00
0121hoq-m1_A_G2_A3AAAAA00780.28 AA00
0131hoq-m2_A_G2_A3AAAAA00680.39 AA00
0141hoq-m3_A_G2_A3AAAAA00590.36 AA00
0151hoq-m4_A_G2_A3AAAAA00660.39 AA00
0161hoq-m5_A_G2_A3AAAAA00820.30 AA00
0171hoq-m6_A_G2_A3AAAAA00560.40 AA00
0181hoq-m7_A_G2_A3AAAAA00530.41 AA00
0191hoq-m8_A_G2_A3AAAAA00530.40 AA00
0201hoq-m9_A_G2_A3AAAAA00510.41 AA00
0211hoq-m10_A_A3_C4AAAAA00760.31 AA00
0221hoq-m1_A_A3_C4AAAAA00590.23 AA00
0231hoq-m2_A_A3_C4AAAAA08460.27 AA08
0241hoq-m3_A_A3_C4AAAAA08460.37 AA08
0251hoq-m4_A_A3_C4AAAAA08600.29 AA08
0261hoq-m5_A_A3_C4AAAAA08630.35 AA08
0271hoq-m6_A_A3_C4AAAAA08810.29 AA08
0281hoq-m7_A_A3_C4AAAAA08570.35 AA08
0291hoq-m8_A_A3_C4AAAAA00670.20 AA00
0301hoq-m9_A_A3_C4AAAAA00790.19 AA00
0311hoq-m10_A_C4_DT5AAAAA09660.28 AA09
0321hoq-m1_A_C4_DT5AAAAA0260.51 AA02
0331hoq-m2_A_C4_DT5AAAAA04120.75 AA04
0341hoq-m3_A_C4_DT5AAAAA04160.74 AA04
0351hoq-m4_A_C4_DT5AAAAA08140.66 AA08
0361hoq-m5_A_C4_DT5AAAAA09610.17 AA09
0371hoq-m6_A_C4_DT5NANNANT00.83 AA00
0381hoq-m7_A_C4_DT5AAAAA00580.26 AA00
0391hoq-m8_A_C4_DT5AAAAA00230.54 AA00
0401hoq-m9_A_C4_DT5AAAAA00200.53 AA00
0411hoq-m10_A_DT5_DT6A-BAB03380.45 AB03
0421hoq-m1_A_DT5_DT6NANNANT00.57 AB03
0431hoq-m2_A_DT5_DT6NANNANT00.71 AB03
0441hoq-m3_A_DT5_DT6ICLIC02280.41 IC02
0451hoq-m4_A_DT5_DT6NANNANT00.66 AB03
0461hoq-m5_A_DT5_DT6NANNANT00.62 AB05
0471hoq-m6_A_DT5_DT6A-BAB05190.65 AB05
0481hoq-m7_A_DT5_DT6NANNANT00.64 AB05
0491hoq-m8_A_DT5_DT6A-BAB05340.34 AB05
0501hoq-m9_A_DT5_DT6A-BAB05250.55 AB05
0511hoq-m10_A_DT6_DC7BBBBB01480.38 BB01
0521hoq-m1_A_DT6_DC7NANNANT00.80 OP09
0531hoq-m2_A_DT6_DC7BBBBB00210.44 BB00
0541hoq-m3_A_DT6_DC7NANNANT00.56 ZZ02
0551hoq-m4_A_DT6_DC7NANNANT00.71 BB00
0561hoq-m5_A_DT6_DC7BBBBB00220.68 BB00
0571hoq-m6_A_DT6_DC7NANNANT00.74 OP22
0581hoq-m7_A_DT6_DC7BBBBB00390.37 BB00
0591hoq-m8_A_DT6_DC7NANNANT01.52 OP21
0601hoq-m9_A_DT6_DC7NANNANT01.19 OP26
0611hoq-m10_A_DC7_DG8NANNANT00.87 ZZ2S
0621hoq-m1_A_DC7_DG8NANNANT01.12 IC04
0631hoq-m2_A_DC7_DG8NANNANT01.14 OP19
0641hoq-m3_A_DC7_DG8NANNANT01.49 BB08
0651hoq-m4_A_DC7_DG8NANNANT00.54 ZZ2S
0661hoq-m5_A_DC7_DG8NANNANT00.68 ZZ2S
0671hoq-m6_A_DC7_DG8NANNANT01.60 OP02
0681hoq-m7_A_DC7_DG8NANNANT00.44 ZZ2S
0691hoq-m8_A_DC7_DG8NANNANT00.54 AA05
0701hoq-m9_A_DC7_DG8NANNANT02.01 OP05
0711hoq-m10_A_DG8_DG9NANNANT00.58 BBS1
0721hoq-m1_A_DG8_DG9NANNANT00.96 BB10
0731hoq-m2_A_DG8_DG9B-ABA05720.28 BA05
0741hoq-m3_A_DG8_DG9NANNANT00.96 BA08
0751hoq-m4_A_DG8_DG9SYNBBS1140.28 BBS1
0761hoq-m5_A_DG8_DG9NANNANT00.50 BBS1
0771hoq-m6_A_DG8_DG9NANNANT01.48 AA07
0781hoq-m7_A_DG8_DG9SYNBBS1120.49 BBS1
0791hoq-m8_A_DG8_DG9NANNANT00.57 BBS1
0801hoq-m9_A_DG8_DG9NANNANT01.56 AA07
0811hoq-m10_A_DG9_DT10AAAAA02110.59 AA02
0821hoq-m1_A_DG9_DT10BBBBB01180.19 BB01
0831hoq-m2_A_DG9_DT10AAAAA02380.49 AA02
0841hoq-m3_A_DG9_DT10AAAAA02500.43 AA02
0851hoq-m4_A_DG9_DT10AAAAA02420.47 AA02
0861hoq-m5_A_DG9_DT10BBBBB01310.22 BB01
0871hoq-m6_A_DG9_DT10AAAAA02260.54 AA02
0881hoq-m7_A_DG9_DT10BBBBB01200.20 BB01
0891hoq-m8_A_DG9_DT10AAAAA0290.62 AA02
0901hoq-m9_A_DG9_DT10NANNANT00.45 AA04
0911hoq-m10_A_DT10_DC11AAAAA02250.60 AA02
0921hoq-m1_A_DT10_DC11B-ABA05480.24 BA05
0931hoq-m2_A_DT10_DC11AAAAA02230.56 AA02
0941hoq-m3_A_DT10_DC11AAAAA02300.54 AA02
0951hoq-m4_A_DT10_DC11AAAAA0060.44 AA00
0961hoq-m5_A_DT10_DC11AAAAA0050.46 AA00
0971hoq-m6_A_DT10_DC11AAAAA0070.43 AA00
0981hoq-m7_A_DT10_DC11AAAAA0050.45 AA00
0991hoq-m8_A_DT10_DC11AAAAA0090.42 AA00
1001hoq-m9_A_DT10_DC11AAAAA0090.43 AA00
1011hoq-m10_A_DC11_DC12AAAAA00200.40 AA00
1021hoq-m1_A_DC11_DC12AAAAA00170.40 AA00
1031hoq-m2_A_DC11_DC12AAAAA00180.38 AA00
1041hoq-m3_A_DC11_DC12AAAAA00150.41 AA00
1051hoq-m4_A_DC11_DC12AAAAA00190.39 AA00
1061hoq-m5_A_DC11_DC12AAAAA00150.39 AA00
1071hoq-m6_A_DC11_DC12AAAAA00200.39 AA00
1081hoq-m7_A_DC11_DC12AAAAA00190.39 AA00
1091hoq-m8_A_DC11_DC12AAAAA00130.38 AA00
1101hoq-m9_A_DC11_DC12AAAAA00160.38 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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