Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1hlo_C_DC102_DA103 | B-A | BA13 | 40 | 0.30 |
| 02 | 1hlo_C_DA103_DC104 | A-B | AB04 | 21 | 0.41 |
| 03 | 1hlo_C_DC104_DC105 | BBB | BB01 | 35 | 0.31 |
| 04 | 1hlo_C_DC105_DA106 | BBB | BB00 | 50 | 0.41 |
| 05 | 1hlo_C_DA106_DC107 | BBB | BB01 | 55 | 0.26 |
| 06 | 1hlo_C_DC107_DG108 | BBB | BB00 | 35 | 0.36 |
| 07 | 1hlo_C_DG108_DT109 | BBw | BB02 | 78 | 0.16 |
| 08 | 1hlo_C_DT109_DG110 | BBB | BB00 | 72 | 0.15 |
| 09 | 1hlo_C_DG110_DG111 | BBB | BB00 | 75 | 0.21 |
| 10 | 1hlo_C_DG111_DT112 | NAN | NANT | 0 | 0.41 |
| 11 | 1hlo_D_DA116_DC117 | miB | BB15 | 44 | 0.41 |
| 12 | 1hlo_D_DC117_DC118 | BBB | BB00 | 86 | 0.16 |
| 13 | 1hlo_D_DC118_DA119 | BBB | BB00 | 57 | 0.38 |
| 14 | 1hlo_D_DA119_DC120 | BBB | BB00 | 12 | 0.31 |
| 15 | 1hlo_D_DC120_DG121 | A-B | AB03 | 77 | 0.20 |
| 16 | 1hlo_D_DG121_DT122 | BBw | BB02 | 91 | 0.08 |
| 17 | 1hlo_D_DT122_DG123 | BBB | BB00 | 75 | 0.33 |
| 18 | 1hlo_D_DG123_DG124 | BBB | BB00 | 67 | 0.28 |
| 19 | 1hlo_D_DG124_DT125 | BBB | BB00 | 53 | 0.45 |
| 20 | 1hlo_D_DT125_DG126 | BBB | BB01 | 56 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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