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Conformers: ABBIImiBZICOPNSYNN
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HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011hcr_B_DT2_DG3NANNANT01.50 IC04
021hcr_B_DG3_DT4NANNANT00.73 OP24
031hcr_B_DT4_DT5AAAAA00220.68 AA00
041hcr_B_DT5_DT6NANNANT00.65 BB16
051hcr_B_DT6_DT7B-ABA08560.49 BA08
061hcr_B_DT7_DT8NANNANT00.48 AB01
071hcr_B_DT8_DG9BBBBB00310.43 BB00
081hcr_B_DG9_DA10BB2BB07340.34 BB07
091hcr_B_DA10_DT11B-ABA08510.62 BA08
101hcr_B_DT11_DA12A-BAB03460.53 AB03
111hcr_B_DA12_DA13NANNANT00.44 BA05
121hcr_B_DA13_DG14NANNANT00.62 AA01
131hcr_B_DG14_DA15NANNANT01.41 OP24
141hcr_C_DT17_DC18NANNANT00.38 BB03
151hcr_C_DC18_DT19NANNANT00.53 AA04
161hcr_C_DT19_DT20AAAAA02330.54 AA02
171hcr_C_DT20_DA21A-BAB01530.36 AB01
181hcr_C_DA21_DT22BBBBB01580.25 BB01
191hcr_C_DT22_DC23BBBBB01320.38 BB01
201hcr_C_DC23_DA24NANNANT00.58 BB00
211hcr_C_DA24_DA25BBBBB00190.41 BB00
221hcr_C_DA25_DA26NANNANT00.43 BA17
231hcr_C_DA26_DA27A-BAB01180.51 AB01
241hcr_C_DA27_DA28B-ABA08350.42 BA08
251hcr_C_DA28_DC29NANNANT00.48 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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