Conformers:
ABBIImiBZICOPNSYNN
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THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1hcq_C_DC1_DC2 | A-B | AB04 | 23 | 0.47 |
| 02 | 1hcq_C_DC2_DA3 | BBB | BB01 | 7 | 0.46 |
| 03 | 1hcq_C_DA3_DG4 | BBB | BB00 | 79 | 0.25 |
| 04 | 1hcq_C_DG4_DG5 | BBw | BB02 | 13 | 0.32 |
| 05 | 1hcq_C_DG5_DT6 | NAN | NANT | 0 | 0.32 |
| 06 | 1hcq_C_DT6_DC7 | BBB | BB00 | 51 | 0.32 |
| 07 | 1hcq_C_DC7_DA8 | BB2 | BB07 | 50 | 0.32 |
| 08 | 1hcq_C_DA8_DC9 | B-A | BA05 | 55 | 0.29 |
| 09 | 1hcq_C_DC9_DA10 | BBB | BB00 | 16 | 0.38 |
| 10 | 1hcq_C_DA10_DG11 | BBB | BB00 | 59 | 0.28 |
| 11 | 1hcq_C_DG11_DT12 | B-A | BA05 | 64 | 0.25 |
| 12 | 1hcq_C_DT12_DG13 | A-B | AB01 | 15 | 0.38 |
| 13 | 1hcq_C_DG13_DA14 | BB2 | BB07 | 84 | 0.18 |
| 14 | 1hcq_C_DA14_DC15 | miB | BB15 | 46 | 0.29 |
| 15 | 1hcq_C_DC15_DC16 | B-A | BA08 | 56 | 0.56 |
| 16 | 1hcq_C_DC16_DT17 | BBB | BB00 | 17 | 0.28 |
| 17 | 1hcq_C_DT17_DG18 | BBB | BB00 | 50 | 0.28 |
| 18 | 1hcq_D_DC19_DC20 | A-B | AB01 | 21 | 0.36 |
| 19 | 1hcq_D_DC20_DA21 | BBB | BB00 | 19 | 0.46 |
| 20 | 1hcq_D_DA21_DG22 | BBB | BB00 | 31 | 0.34 |
| 21 | 1hcq_D_DG22_DG23 | B12 | BB04 | 60 | 0.27 |
| 22 | 1hcq_D_DG23_DT24 | miB | BB15 | 76 | 0.26 |
| 23 | 1hcq_D_DT24_DC25 | BBB | BB00 | 32 | 0.32 |
| 24 | 1hcq_D_DC25_DA26 | BB2 | BB07 | 46 | 0.28 |
| 25 | 1hcq_D_DA26_DC27 | B-A | BA05 | 33 | 0.30 |
| 26 | 1hcq_D_DC27_DT28 | AAA | AA02 | 26 | 0.55 |
| 27 | 1hcq_D_DT28_DG29 | BBB | BB00 | 17 | 0.35 |
| 28 | 1hcq_D_DG29_DT30 | B-A | BA05 | 18 | 0.26 |
| 29 | 1hcq_D_DT30_DG31 | A-B | AB03 | 22 | 0.30 |
| 30 | 1hcq_D_DG31_DA32 | BB2 | BB07 | 81 | 0.18 |
| 31 | 1hcq_D_DA32_DC33 | B-A | BA05 | 59 | 0.24 |
| 32 | 1hcq_D_DC33_DC34 | NAN | NANT | 0 | 0.41 |
| 33 | 1hcq_D_DC34_DT35 | NAN | NANT | 0 | 0.26 |
| 34 | 1hcq_D_DT35_DG36 | NAN | NANT | 0 | 0.35 |
| 35 | 1hcq_G_DC1_DC2 | NAN | NANT | 0 | 0.52 |
| 36 | 1hcq_G_DC2_DA3 | BBB | BB00 | 34 | 0.48 |
| 37 | 1hcq_G_DA3_DG4 | BBB | BB00 | 70 | 0.28 |
| 38 | 1hcq_G_DG4_DG5 | NAN | NANT | 0 | 0.40 |
| 39 | 1hcq_G_DG5_DT6 | BBB | BB01 | 54 | 0.33 |
| 40 | 1hcq_G_DT6_DC7 | BBB | BB00 | 23 | 0.26 |
| 41 | 1hcq_G_DC7_DA8 | BB2 | BB07 | 79 | 0.29 |
| 42 | 1hcq_G_DA8_DC9 | B-A | BA05 | 45 | 0.27 |
| 43 | 1hcq_G_DC9_DA10 | A-B | AB01 | 12 | 0.32 |
| 44 | 1hcq_G_DA10_DG11 | NAN | NANT | 0 | 0.30 |
| 45 | 1hcq_G_DG11_DT12 | BBB | BB00 | 10 | 0.25 |
| 46 | 1hcq_G_DT12_DG13 | BBB | BB00 | 37 | 0.33 |
| 47 | 1hcq_G_DG13_DA14 | BB2 | BB07 | 78 | 0.17 |
| 48 | 1hcq_G_DA14_DC15 | B-A | BA01 | 18 | 0.24 |
| 49 | 1hcq_G_DC15_DC16 | A-B | AB01 | 10 | 0.47 |
| 50 | 1hcq_G_DC16_DT17 | BBB | BB01 | 16 | 0.32 |
| 51 | 1hcq_G_DT17_DG18 | BBB | BB00 | 16 | 0.40 |
| 52 | 1hcq_H_DC19_DC20 | A-B | AB01 | 8 | 0.38 |
| 53 | 1hcq_H_DC20_DA21 | BBB | BB00 | 18 | 0.47 |
| 54 | 1hcq_H_DA21_DG22 | BBB | BB00 | 38 | 0.36 |
| 55 | 1hcq_H_DG22_DG23 | NAN | NANT | 0 | 0.43 |
| 56 | 1hcq_H_DG23_DT24 | miB | BB15 | 82 | 0.24 |
| 57 | 1hcq_H_DT24_DC25 | BBB | BB00 | 31 | 0.32 |
| 58 | 1hcq_H_DC25_DA26 | BB2 | BB07 | 69 | 0.24 |
| 59 | 1hcq_H_DA26_DC27 | B-A | BA01 | 19 | 0.29 |
| 60 | 1hcq_H_DC27_DT28 | BBB | BB01 | 12 | 0.28 |
| 61 | 1hcq_H_DT28_DG29 | BBB | BB00 | 52 | 0.34 |
| 62 | 1hcq_H_DG29_DT30 | BBB | BB01 | 68 | 0.14 |
| 63 | 1hcq_H_DT30_DG31 | BBB | BB00 | 27 | 0.39 |
| 64 | 1hcq_H_DG31_DA32 | BB2 | BB07 | 67 | 0.17 |
| 65 | 1hcq_H_DA32_DC33 | B-A | BA01 | 22 | 0.27 |
| 66 | 1hcq_H_DC33_DC34 | A-B | AB01 | 19 | 0.39 |
| 67 | 1hcq_H_DC34_DT35 | NAN | NANT | 0 | 0.37 |
| 68 | 1hcq_H_DT35_DG36 | NAN | NANT | 0 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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