Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1h88_D_DG1_DA2 | BBB | BB00 | 44 | 0.32 |
| 02 | 1h88_D_DA2_DT3 | BBB | BB00 | 67 | 0.24 |
| 03 | 1h88_D_DT3_DG4 | BBB | BB00 | 62 | 0.32 |
| 04 | 1h88_D_DG4_DT5 | BBw | BB02 | 82 | 0.16 |
| 05 | 1h88_D_DT5_DG6 | BBB | BB00 | 69 | 0.18 |
| 06 | 1h88_D_DG6_DG7 | BBw | BB02 | 68 | 0.30 |
| 07 | 1h88_D_DG7_DC8 | miB | BB15 | 74 | 0.22 |
| 08 | 1h88_D_DC8_DG9 | BBB | BB00 | 77 | 0.29 |
| 09 | 1h88_D_DG9_DC10 | BBw | BB02 | 19 | 0.30 |
| 10 | 1h88_D_DC10_DA11 | BBB | BB00 | 36 | 0.52 |
| 11 | 1h88_D_DA11_DA12 | B12 | BB04 | 65 | 0.19 |
| 12 | 1h88_D_DA12_DT13 | BBB | BB00 | 13 | 0.44 |
| 13 | 1h88_D_DT13_DC14 | BBB | BB00 | 29 | 0.37 |
| 14 | 1h88_D_DC14_DC15 | NAN | NANT | 0 | 0.24 |
| 15 | 1h88_D_DC15_DT16 | BBB | BB00 | 52 | 0.32 |
| 16 | 1h88_D_DT16_DT17 | miB | BB15 | 27 | 0.34 |
| 17 | 1h88_D_DT17_DA18 | B12 | BB04 | 28 | 0.45 |
| 18 | 1h88_D_DA18_DA19 | BBB | BB00 | 35 | 0.33 |
| 19 | 1h88_D_DA19_DC20 | BB2 | BB07 | 13 | 0.44 |
| 20 | 1h88_D_DC20_DG21 | BBB | BB00 | 64 | 0.22 |
| 21 | 1h88_D_DG21_DG22 | BBw | BB02 | 60 | 0.39 |
| 22 | 1h88_D_DG22_DA23 | BBB | BB00 | 39 | 0.28 |
| 23 | 1h88_D_DA23_DC24 | BBw | BB02 | 39 | 0.23 |
| 24 | 1h88_D_DC24_DT25 | BBB | BB00 | 56 | 0.28 |
| 25 | 1h88_D_DT25_DG26 | BBB | BB00 | 12 | 0.18 |
| 26 | 1h88_E_DC1_DC2 | miB | BB15 | 61 | 0.29 |
| 27 | 1h88_E_DC2_DA3 | BBB | BB00 | 53 | 0.32 |
| 28 | 1h88_E_DA3_DG4 | BBw | BB02 | 58 | 0.22 |
| 29 | 1h88_E_DG4_DT5 | BBw | BB02 | 64 | 0.22 |
| 30 | 1h88_E_DT5_DC6 | BBw | BB02 | 77 | 0.16 |
| 31 | 1h88_E_DC6_DC7 | BBw | BB02 | 65 | 0.33 |
| 32 | 1h88_E_DC7_DG8 | BBB | BB00 | 47 | 0.45 |
| 33 | 1h88_E_DG8_DT9 | BBB | BB00 | 17 | 0.34 |
| 34 | 1h88_E_DT9_DT10 | BBw | BB02 | 77 | 0.31 |
| 35 | 1h88_E_DT10_DA11 | miB | BB15 | 28 | 0.52 |
| 36 | 1h88_E_DA11_DA12 | BB2 | BB07 | 14 | 0.38 |
| 37 | 1h88_E_DA12_DG13 | BBw | BB02 | 67 | 0.20 |
| 38 | 1h88_E_DG13_DG14 | BBB | BB00 | 38 | 0.48 |
| 39 | 1h88_E_DG14_DA15 | BBB | BB00 | 51 | 0.25 |
| 40 | 1h88_E_DA15_DT16 | BBw | BB02 | 75 | 0.21 |
| 41 | 1h88_E_DT16_DT17 | BBw | BB02 | 69 | 0.29 |
| 42 | 1h88_E_DT17_DG18 | BBB | BB00 | 66 | 0.32 |
| 43 | 1h88_E_DG18_DC19 | miB | BB15 | 68 | 0.21 |
| 44 | 1h88_E_DC19_DG20 | BBB | BB00 | 62 | 0.23 |
| 45 | 1h88_E_DG20_DC21 | B12 | BB04 | 38 | 0.29 |
| 46 | 1h88_E_DC21_DC22 | BBw | BB02 | 68 | 0.21 |
| 47 | 1h88_E_DC22_DA23 | BBB | BB00 | 79 | 0.31 |
| 48 | 1h88_E_DA23_DC24 | miB | BB15 | 61 | 0.29 |
| 49 | 1h88_E_DC24_DA25 | BBw | BB02 | 52 | 0.34 |
| 50 | 1h88_E_DA25_DT26 | BBw | BB03 | 82 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|