DNATCO v4.1: results

Structure of a T7 RNA polymerase elongation complex at 2.9A resolution

Results of the assignment of 125 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1h38_E_DG2_DG3	NAN	NANT	0	0.67	BB16
002	1h38_E_DG3_DA4	BBw	BB03	48	0.33	BB03
003	1h38_E_DA4_DA5	BB2	BB07	33	0.48	BB07
004	1h38_E_DA5_DT6	BBB	BB00	68	0.31	BB00
005	1h38_E_DT6_DC7	BB2	BB07	54	0.20	BB07
006	1h38_E_DC7_DG8	BBB	BB00	31	0.46	BB00
007	1h38_E_DG8_DA9	BBB	BB00	83	0.12	BB00
008	1h38_E_DA9_DC10	NAN	NANT	0	0.92	OP21
009	1h38_E_DC10_DA11	NAN	NANT	0	0.58	OP15
010	1h38_E_DA11_DT12	BBB	BB01	15	0.36	BB01
011	1h38_E_DT12_DC13	NAN	NANT	0	0.39	BB00
012	1h38_E_DC13_DG14	BBB	BB00	31	0.30	BB00
013	1h38_E_DG14_DC15	BBB	BB00	15	0.43	BB00
014	1h38_E_DC15_DC16	BBB	BB00	22	0.30	BB00
015	1h38_E_DC16_DG17	BBB	BB00	60	0.32	BB00
016	1h38_E_DG17_DC18	B12	BB04	83	0.22	BB04
017	1h38_F_G1_C2	AAA	AA08	72	0.33	AA08
018	1h38_F_C2_G3	AAA	AA00	77	0.15	AA00
019	1h38_F_G3_G4	AAA	AA08	81	0.16	AA08
020	1h38_F_G4_C5	AAA	AA00	83	0.19	AA00
021	1h38_F_C5_G6	AAA	AA08	86	0.16	AA08
022	1h38_F_G6_A7	AAA	AA00	82	0.17	AA00
023	1h38_F_A7_U8	AAA	AA00	82	0.21	AA00
024	1h38_G_DG1_DT2	NAN	NANT	0	0.76	BB04
025	1h38_G_DT2_DC3	NAN	NANT	0	0.65	BB00
026	1h38_G_DC3_DG4	NAN	NANT	0	0.45	BB04
027	1h38_G_DG4_DA5	B12	BB04	55	0.38	BB04
028	1h38_G_DA5_DT6	B12	BB04	45	0.38	BB04
029	1h38_G_DT6_DT7	BBB	BB00	84	0.35	BB00
030	1h38_G_DT7_DC8	B12	BB04	48	0.25	BB04
031	1h38_G_DC8_DC9	BBB	BB00	74	0.22	BB00
032	1h38_H_DG1_DG2	NAN	NANT	0	0.40	BB16
033	1h38_H_DG2_DG3	NAN	NANT	0	0.58	BB10
034	1h38_H_DG3_DA4	BBB	BB00	58	0.39	BB00
035	1h38_H_DA4_DA5	BBB	BB00	89	0.11	BB00
036	1h38_H_DA5_DT6	BBB	BB00	45	0.39	BB00
037	1h38_H_DT6_DC7	B12	BB04	56	0.18	BB04
038	1h38_H_DC7_DG8	BBB	BB00	84	0.19	BB00
039	1h38_H_DG8_DA9	BBB	BB00	45	0.45	BB00
040	1h38_H_DA9_DC10	NAN	NANT	0	1.13	OP21
041	1h38_H_DC10_DA11	NAN	NANT	0	0.66	OP15
042	1h38_H_DA11_DT12	BBB	BB01	19	0.36	BB01
043	1h38_H_DT12_DC13	BBB	BB00	20	0.37	BB00
044	1h38_H_DC13_DG14	BBB	BB00	35	0.30	BB00
045	1h38_H_DG14_DC15	BBB	BB00	19	0.42	BB00
046	1h38_H_DC15_DC16	BBB	BB00	26	0.31	BB00
047	1h38_H_DC16_DG17	BBB	BB00	52	0.33	BB00
048	1h38_H_DG17_DC18	B12	BB04	80	0.23	BB04
049	1h38_I_G1_C2	AAA	AA08	71	0.33	AA08
050	1h38_I_C2_G3	AAA	AA00	78	0.14	AA00
051	1h38_I_G3_G4	AAA	AA08	83	0.16	AA08
052	1h38_I_G4_C5	AAA	AA00	83	0.17	AA00
053	1h38_I_C5_G6	AAA	AA00	84	0.14	AA00
054	1h38_I_G6_A7	AAA	AA00	86	0.16	AA00
055	1h38_I_A7_U8	AAA	AA00	78	0.22	AA00
056	1h38_J_DG1_DT2	NAN	NANT	0	0.94	BB00
057	1h38_J_DT2_DC3	B12	BB04	34	0.35	BB04
058	1h38_J_DC3_DG4	NAN	NANT	0	0.31	BB15
059	1h38_J_DG4_DA5	BB2	BB07	25	0.34	BB07
060	1h38_J_DA5_DT6	BB2	BB07	87	0.29	BB07
061	1h38_J_DT6_DT7	B12	BB04	83	0.33	BB04
062	1h38_J_DT7_DC8	BBB	BB00	72	0.31	BB00
063	1h38_J_DC8_DC9	B12	BB04	59	0.20	BB04
064	1h38_K_DG2_DG3	BBB	BB00	67	0.24	BB00
065	1h38_K_DG3_DA4	BBB	BB00	51	0.48	BB00
066	1h38_K_DA4_DA5	BBB	BB00	27	0.36	BB00
067	1h38_K_DA5_DT6	BBw	BB02	27	0.50	BB02
068	1h38_K_DT6_DC7	BBB	BB00	33	0.41	BB00
069	1h38_K_DC7_DG8	BBB	BB00	39	0.39	BB00
070	1h38_K_DG8_DA9	BB2	BB07	47	0.34	BB07
071	1h38_K_DA9_DC10	NAN	NANT	0	1.13	OP21
072	1h38_K_DC10_DA11	NAN	NANT	0	0.61	OP15
073	1h38_K_DA11_DT12	BBB	BB01	11	0.37	BB01
074	1h38_K_DT12_DC13	NAN	NANT	0	0.36	BB00
075	1h38_K_DC13_DG14	BBB	BB00	34	0.30	BB00
076	1h38_K_DG14_DC15	BBB	BB00	17	0.43	BB00
077	1h38_K_DC15_DC16	BBB	BB00	26	0.32	BB00
078	1h38_K_DC16_DG17	BBB	BB00	57	0.32	BB00
079	1h38_K_DG17_DC18	B12	BB04	84	0.23	BB04
080	1h38_L_G1_C2	AAA	AA08	71	0.33	AA08
081	1h38_L_C2_G3	AAA	AA00	78	0.14	AA00
082	1h38_L_G3_G4	AAA	AA08	82	0.16	AA08
083	1h38_L_G4_C5	AAA	AA00	87	0.17	AA00
084	1h38_L_C5_G6	AAA	AA00	87	0.12	AA00
085	1h38_L_G6_A7	AAA	AA00	83	0.16	AA00
086	1h38_L_A7_U8	AAA	AA00	80	0.21	AA00
087	1h38_M_DG1_DT2	OPN	OP22	34	0.47	OP22
088	1h38_M_DT2_DC3	BBB	BB00	63	0.28	BB00
089	1h38_M_DC3_DG4	BBB	BB00	62	0.32	BB00
090	1h38_M_DG4_DA5	NAN	NANT	0	0.48	BB07
091	1h38_M_DA5_DT6	B12	BB04	35	0.23	BB04
092	1h38_M_DT6_DT7	BBB	BB00	82	0.32	BB00
093	1h38_M_DT7_DC8	B12	BB04	60	0.39	BB04
094	1h38_M_DC8_DC9	BBB	BB00	15	0.54	BB00
095	1h38_N_DG2_DG3	B12	BB04	66	0.34	BB04
096	1h38_N_DG3_DA4	BBB	BB00	75	0.27	BB00
097	1h38_N_DA4_DA5	NAN	NANT	0	0.36	BB00
098	1h38_N_DA5_DT6	BBB	BB00	30	0.47	BB00
099	1h38_N_DT6_DC7	B12	BB04	86	0.15	BB04
100	1h38_N_DC7_DG8	miB	BB15	23	0.28	BB15
101	1h38_N_DG8_DA9	B12	BB04	52	0.34	BB04
102	1h38_N_DA9_DC10	NAN	NANT	0	0.93	OP21
103	1h38_N_DC10_DA11	NAN	NANT	0	0.66	OP15
104	1h38_N_DA11_DT12	BBB	BB01	21	0.36	BB01
105	1h38_N_DT12_DC13	NAN	NANT	0	0.36	BB00
106	1h38_N_DC13_DG14	BBB	BB00	41	0.29	BB00
107	1h38_N_DG14_DC15	BBB	BB00	22	0.43	BB00
108	1h38_N_DC15_DC16	BBB	BB00	31	0.30	BB00
109	1h38_N_DC16_DG17	BBB	BB00	56	0.32	BB00
110	1h38_N_DG17_DC18	B12	BB04	83	0.23	BB04
111	1h38_O_G1_C2	AAA	AA08	73	0.33	AA08
112	1h38_O_C2_G3	AAA	AA00	78	0.14	AA00
113	1h38_O_G3_G4	AAA	AA08	84	0.17	AA08
114	1h38_O_G4_C5	AAA	AA00	88	0.16	AA00
115	1h38_O_C5_G6	AAA	AA00	85	0.13	AA00
116	1h38_O_G6_A7	AAA	AA00	86	0.16	AA00
117	1h38_O_A7_U8	AAA	AA00	80	0.21	AA00
118	1h38_P_DG1_DT2	NAN	NANT	0	0.42	IC01
119	1h38_P_DT2_DC3	B12	BB04	21	0.39	BB04
120	1h38_P_DC3_DG4	BBB	BB00	57	0.41	BB00
121	1h38_P_DG4_DA5	B12	BB04	35	0.42	BB04
122	1h38_P_DA5_DT6	BB2	BB07	66	0.21	BB07
123	1h38_P_DT6_DT7	B12	BB04	78	0.29	BB04
124	1h38_P_DT7_DC8	BBB	BB00	73	0.40	BB00
125	1h38_P_DC8_DC9	B12	BB04	38	0.38	BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 125 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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