Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011gtr_B_G2_G3AAAAA00890.10 AA00
021gtr_B_G3_G4AAAAA00880.18 AA00
031gtr_B_G4_G5AAwAA01870.19 AA01
041gtr_B_G5_U6AAAAA00910.20 AA00
051gtr_B_U6_A7NANNANT00.47 AA01
061gtr_B_A7_U8OPNOP11730.28 OP11
071gtr_B_U8_C9NANNANT01.09 IC02
081gtr_B_C9_G10NANNANT01.26 OP26
091gtr_B_G10_C11AAAAA00440.30 AA00
101gtr_B_C11_C12AAAAA00740.31 AA00
111gtr_B_C12_A13AAAAA00290.46 AA00
121gtr_B_A13_A14AAAAA00200.46 AA00
131gtr_B_A14_G15AAAAA08700.47 AA08
141gtr_B_G15_C16NANNANT01.87 AB02
151gtr_B_C16_G18NANNANT01.85 OP13
161gtr_B_G18_G19ICLIC05120.35 IC05
171gtr_B_G19_U20NANNANT00.62 OP22
181gtr_B_U20_A21NANNANT01.80 OP11
191gtr_B_A21_A22NANNANT00.74 IC07
201gtr_B_A22_G23AAAAA08610.50 AA08
211gtr_B_G23_G24AAAAA00880.16 AA00
221gtr_B_G24_C25AAAAA00860.15 AA00
231gtr_B_C25_A26AAAAA00730.36 AA00
241gtr_B_A26_C27AAAAA00810.23 AA00
251gtr_B_C27_C28AAAAA00750.18 AA00
261gtr_B_C28_G29NANNANT00.42 AA10
271gtr_B_G29_G30NANNANT00.54 AA03
281gtr_B_G30_A31AAAAA00580.32 AA00
291gtr_B_A31_U32NANNANT00.54 AA06
301gtr_B_U32_U33AAAAA00520.35 AA00
311gtr_B_U33_C34NANNANT00.74 OP29
321gtr_B_C34_U35NANNANT01.04 IC05
331gtr_B_U35_G36NANNANT01.34 OP17
341gtr_B_G36_A37OPNOP11390.54 OP11
351gtr_B_A37_U38AAAAA00600.38 AA00
361gtr_B_U38_U39AAAAA00270.46 AA00
371gtr_B_U39_C40AAAAA00950.17 AA00
381gtr_B_C40_C41NANNANT00.55 AA06
391gtr_B_C41_G42AAAAA08740.28 AA08
401gtr_B_G42_G43AAAAA00590.29 AA00
411gtr_B_G43_C44NANNANT00.46 AA11
421gtr_B_C44_A45NANNANT01.02 IC02
431gtr_B_A45_U46NANNANT02.30 OP18
441gtr_B_U46_U47NANNANT01.25 OP01
451gtr_B_U47_C48NANNANT00.51 OP22
461gtr_B_C48_C49NANNANT01.36 OP05
471gtr_B_C49_G50AAAAA00640.25 AA00
481gtr_B_G50_A51AAAAA00900.12 AA00
491gtr_B_A51_G52AAwAA06650.23 AA06
501gtr_B_G52_G53NANNANT00.33 AA08
511gtr_B_G53_U54AAAAA08420.25 AA08
521gtr_B_U54_U55AAAAA00580.27 AA00
531gtr_B_U55_C56OPNOP04900.14 OP04
541gtr_B_C56_G57AAAAA08740.20 AA08
551gtr_B_G57_A58ICLIC01850.34 IC01
561gtr_B_A58_A59OPNOP25750.27 OP25
571gtr_B_A59_U60NANNANT00.61 BB03
581gtr_B_U60_C61OPNOP12770.33 OP12
591gtr_B_C61_C62NANNANT00.35 AA03
601gtr_B_C62_U63NANNANT00.42 AA10
611gtr_B_U63_C64AAAAA08400.44 AA08
621gtr_B_C64_G65AAwAA06830.19 AA06
631gtr_B_G65_U66AAAAA08850.16 AA08
641gtr_B_U66_A67AAAAA00910.12 AA00
651gtr_B_A67_C68AAAAA08850.18 AA08
661gtr_B_C68_C69AAAAA00920.15 AA00
671gtr_B_C69_C70AAAAA00900.18 AA00
681gtr_B_C70_C71AAAAA00760.20 AA00
691gtr_B_C71_A72AAuAA12230.69 AA12
701gtr_B_A72_G73NANNANT00.70 OP31
711gtr_B_G73_C74NANNANT01.07 OP25
721gtr_B_C74_C75NANNANT00.96 OP31
731gtr_B_C75_A76AAAAA00260.39 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N