Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a POU/HMG/DNA ternary complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1gt0_A_DT1_DT2 | AAA | AA04 | 15 | 0.43 |
| 02 | 1gt0_A_DT2_DC3 | NAN | NANT | 0 | 0.54 |
| 03 | 1gt0_A_DC3_DT4 | NAN | NANT | 0 | 0.80 |
| 04 | 1gt0_A_DT4_DT5 | AAA | AA02 | 60 | 0.26 |
| 05 | 1gt0_A_DT5_DT6 | AAA | AA02 | 18 | 0.41 |
| 06 | 1gt0_A_DT6_DG7 | NAN | NANT | 0 | 0.27 |
| 07 | 1gt0_A_DG7_DT8 | NAN | NANT | 0 | 0.17 |
| 08 | 1gt0_A_DT8_DT9 | NAN | NANT | 0 | 0.30 |
| 09 | 1gt0_A_DT9_DT10 | NAN | NANT | 0 | 0.38 |
| 10 | 1gt0_A_DT10_DG11 | NAN | NANT | 0 | 0.38 |
| 11 | 1gt0_A_DG11_DG12 | AAA | AA02 | 20 | 0.52 |
| 12 | 1gt0_A_DG12_DA13 | NAN | NANT | 0 | 0.42 |
| 13 | 1gt0_A_DA13_DT14 | NAN | NANT | 0 | 0.31 |
| 14 | 1gt0_A_DT14_DG15 | NAN | NANT | 0 | 0.63 |
| 15 | 1gt0_A_DG15_DC16 | NAN | NANT | 0 | 0.34 |
| 16 | 1gt0_A_DC16_DT17 | NAN | NANT | 0 | 0.25 |
| 17 | 1gt0_A_DT17_DA18 | NAN | NANT | 0 | 0.31 |
| 18 | 1gt0_A_DA18_DA19 | NAN | NANT | 0 | 0.16 |
| 19 | 1gt0_A_DA19_DT20 | NAN | NANT | 0 | 0.29 |
| 20 | 1gt0_A_DT20_DG21 | NAN | NANT | 0 | 0.24 |
| 21 | 1gt0_A_DG21_DG22 | NAN | NANT | 0 | 0.46 |
| 22 | 1gt0_A_DG22_DG23 | NAN | NANT | 0 | 0.44 |
| 23 | 1gt0_A_DG23_DA24 | AAA | AA04 | 9 | 0.43 |
| 24 | 1gt0_B_DA25_DT26 | NAN | NANT | 0 | 1.17 |
| 25 | 1gt0_B_DT26_DC27 | BBB | BB00 | 24 | 0.48 |
| 26 | 1gt0_B_DC27_DC28 | NAN | NANT | 0 | 0.74 |
| 27 | 1gt0_B_DC28_DC29 | BBB | BB00 | 29 | 0.38 |
| 28 | 1gt0_B_DC29_DA30 | BB2 | BB07 | 11 | 0.30 |
| 29 | 1gt0_B_DA30_DT31 | BBw | BB02 | 72 | 0.17 |
| 30 | 1gt0_B_DT31_DT32 | BBB | BB00 | 65 | 0.20 |
| 31 | 1gt0_B_DT32_DA33 | BBB | BB00 | 33 | 0.21 |
| 32 | 1gt0_B_DA33_DG34 | B12 | BB04 | 34 | 0.26 |
| 33 | 1gt0_B_DG34_DC35 | BB2 | BB07 | 69 | 0.23 |
| 34 | 1gt0_B_DC35_DA36 | BBw | BB02 | 58 | 0.36 |
| 35 | 1gt0_B_DA36_DT37 | BBw | BB02 | 39 | 0.28 |
| 36 | 1gt0_B_DT37_DC38 | BBB | BB00 | 60 | 0.21 |
| 37 | 1gt0_B_DC38_DC39 | B12 | BB04 | 66 | 0.20 |
| 38 | 1gt0_B_DC39_DA40 | B12 | BB04 | 60 | 0.24 |
| 39 | 1gt0_B_DA40_DA41 | B12 | BB04 | 69 | 0.18 |
| 40 | 1gt0_B_DA41_DA42 | BBw | BB02 | 75 | 0.27 |
| 41 | 1gt0_B_DA42_DC43 | BBw | BB02 | 43 | 0.34 |
| 42 | 1gt0_B_DC43_DA44 | NAN | NANT | 0 | 0.43 |
| 43 | 1gt0_B_DA44_DA45 | NAN | NANT | 0 | 0.51 |
| 44 | 1gt0_B_DA45_DA46 | NAN | NANT | 0 | 0.48 |
| 45 | 1gt0_B_DA46_DG47 | BBB | BB00 | 10 | 0.44 |
| 46 | 1gt0_B_DG47_DA48 | BB2 | BB07 | 33 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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