Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of RecG bound to three-way DNA junction
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1gm5_X_DC1_DA2 | NAN | NANT | 0 | 0.50 |
| 02 | 1gm5_X_DA2_DG3 | miB | BB15 | 66 | 0.23 |
| 03 | 1gm5_X_DG3_DC4 | BBw | BB02 | 23 | 0.30 |
| 04 | 1gm5_X_DC4_DT5 | NAN | NANT | 0 | 0.34 |
| 05 | 1gm5_X_DT5_DC6 | BBB | BB00 | 66 | 0.30 |
| 06 | 1gm5_X_DC6_DC7 | BBB | BB00 | 54 | 0.20 |
| 07 | 1gm5_X_DC7_DA8 | miB | BB15 | 65 | 0.32 |
| 08 | 1gm5_X_DA8_DT9 | NAN | NANT | 0 | 0.38 |
| 09 | 1gm5_X_DT9_DG10 | NAN | NANT | 0 | 0.30 |
| 10 | 1gm5_X_DG10_DA11 | NAN | NANT | 0 | 1.51 |
| 11 | 1gm5_X_DA11_DT12 | NAN | NANT | 0 | 0.71 |
| 12 | 1gm5_Y_DG1_DC2 | NAN | NANT | 0 | 0.39 |
| 13 | 1gm5_Y_DC2_DA3 | NAN | NANT | 0 | 0.37 |
| 14 | 1gm5_Y_DA3_DG4 | NAN | NANT | 0 | 0.39 |
| 15 | 1gm5_Y_DG4_DT5 | NAN | NANT | 0 | 0.56 |
| 16 | 1gm5_Y_DT5_DG6 | BBB | BB00 | 41 | 0.42 |
| 17 | 1gm5_Y_DG6_DC7 | NAN | NANT | 0 | 0.51 |
| 18 | 1gm5_Y_DC7_DT8 | NAN | NANT | 0 | 0.45 |
| 19 | 1gm5_Y_DT8_DC9 | NAN | NANT | 0 | 0.40 |
| 20 | 1gm5_Y_DC9_DG10 | NAN | NANT | 0 | 0.39 |
| 21 | 1gm5_Y_DG10_DC11 | NAN | NANT | 0 | 1.86 |
| 22 | 1gm5_Y_DC11_DA12 | NAN | NANT | 0 | 0.42 |
| 23 | 1gm5_Y_DA12_DT13 | BBB | BB00 | 74 | 0.23 |
| 24 | 1gm5_Y_DT13_DG14 | BBB | BB00 | 54 | 0.32 |
| 25 | 1gm5_Y_DG14_DG15 | B12 | BB04 | 42 | 0.20 |
| 26 | 1gm5_Y_DG15_DA16 | BBB | BB00 | 16 | 0.34 |
| 27 | 1gm5_Y_DA16_DG17 | NAN | NANT | 0 | 0.73 |
| 28 | 1gm5_Y_DG17_DC18 | NAN | NANT | 0 | 0.43 |
| 29 | 1gm5_Y_DC18_DT19 | BBB | BB00 | 83 | 0.27 |
| 30 | 1gm5_Y_DT19_DG20 | NAN | NANT | 0 | 0.31 |
| 31 | 1gm5_Z_DG1_DA2 | NAN | NANT | 0 | 0.50 |
| 32 | 1gm5_Z_DA2_DG3 | BBw | BB02 | 46 | 0.39 |
| 33 | 1gm5_Z_DG3_DC4 | BBB | BB00 | 46 | 0.33 |
| 34 | 1gm5_Z_DC4_DA5 | BBw | BB02 | 17 | 0.37 |
| 35 | 1gm5_Z_DA5_DC6 | NAN | NANT | 0 | 0.41 |
| 36 | 1gm5_Z_DC6_DT7 | BBB | BB00 | 48 | 0.28 |
| 37 | 1gm5_Z_DT7_DG8 | BBw | BB02 | 74 | 0.24 |
| 38 | 1gm5_Z_DG8_DC9 | NAN | NANT | 0 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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