Conformers:
ABBIImiBZICOPNSYNN
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SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1gcc_B_DT3_DA4 | BBB | BB00 | 64 | 0.32 |
| 02 | 1gcc_B_DA4_DG5 | BBB | BB00 | 74 | 0.25 |
| 03 | 1gcc_B_DG5_DC6 | BBB | BB00 | 78 | 0.26 |
| 04 | 1gcc_B_DC6_DC7 | BBB | BB00 | 69 | 0.33 |
| 05 | 1gcc_B_DC7_DG8 | BBB | BB01 | 21 | 0.46 |
| 06 | 1gcc_B_DG8_DC9 | NAN | NANT | 0 | 0.54 |
| 07 | 1gcc_B_DC9_DC10 | BBB | BB01 | 86 | 0.17 |
| 08 | 1gcc_B_DC10_DA11 | BBB | BB01 | 57 | 0.28 |
| 09 | 1gcc_B_DA11_DG12 | BBB | BB00 | 88 | 0.16 |
| 10 | 1gcc_B_DG12_DC13 | BBB | BB00 | 89 | 0.16 |
| 11 | 1gcc_C_DG14_DC15 | BBB | BB00 | 67 | 0.28 |
| 12 | 1gcc_C_DC15_DT16 | BBB | BB00 | 71 | 0.26 |
| 13 | 1gcc_C_DT16_DG17 | BBB | BB00 | 43 | 0.43 |
| 14 | 1gcc_C_DG17_DG18 | B-A | BA05 | 62 | 0.31 |
| 15 | 1gcc_C_DG18_DC19 | BBB | BB00 | 30 | 0.45 |
| 16 | 1gcc_C_DC19_DG20 | B-A | BA05 | 47 | 0.29 |
| 17 | 1gcc_C_DG20_DG21 | A-B | AB01 | 24 | 0.52 |
| 18 | 1gcc_C_DG21_DC22 | BBB | BB01 | 80 | 0.21 |
| 19 | 1gcc_C_DC22_DT23 | BBB | BB01 | 82 | 0.22 |
| 20 | 1gcc_C_DT23_DA24 | BBB | BB00 | 19 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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