DNATCO v4.1: results

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1gax_C_G901_G902	AAw	AA01	26	0.25	AA01
002	1gax_C_G902_G903	AAw	AA06	32	0.47	AA06
003	1gax_C_G903_C904	AAA	AA08	68	0.21	AA08
004	1gax_C_C904_G905	AAA	AA00	75	0.14	AA00
005	1gax_C_G905_G906	AAA	AA00	97	0.14	AA00
006	1gax_C_G906_C907	NAN	NANT	0	0.46	AB03
007	1gax_C_C907_U908	NAN	NANT	0	0.59	OP11
008	1gax_C_U908_A909	NAN	NANT	0	1.11	IC03
009	1gax_C_A909_G910	NAN	NANT	0	1.59	OP25
010	1gax_C_G910_C911	NAN	NANT	0	0.69	AA12
011	1gax_C_C911_U912	AAA	AA00	78	0.18	AA00
012	1gax_C_U912_C913	AAw	AA01	78	0.23	AA01
013	1gax_C_C913_A914	AAw	AA01	24	0.42	AA01
014	1gax_C_A914_G915	AAA	AA08	49	0.51	AA08
015	1gax_C_G915_C916	NAN	NANT	0	0.59	AB04
016	1gax_C_C916_G917	NAN	NANT	0	1.89	OP21
017	1gax_C_G917_G918	NAN	NANT	0	1.07	BB17
018	1gax_C_G918_A919	NAN	NANT	0	1.53	IC04
019	1gax_C_A919_A920	NAN	NANT	0	1.23	OP17
020	1gax_C_A920_G921	NAN	NANT	0	1.04	AA01
021	1gax_C_G921_A922	AAA	AA00	84	0.19	AA00
022	1gax_C_A922_G923	AAA	AA00	64	0.15	AA00
023	1gax_C_G923_C924	AAA	AA08	90	0.17	AA08
024	1gax_C_C924_G925	AAA	AA00	85	0.26	AA00
025	1gax_C_G925_C926	AAA	AA00	83	0.28	AA00
026	1gax_C_C926_U927	AAA	AA00	54	0.28	AA00
027	1gax_C_U927_C928	AAA	AA00	83	0.15	AA00
028	1gax_C_C928_G929	NAN	NANT	0	0.49	AA03
029	1gax_C_G929_C930	AAw	AA01	52	0.27	AA01
030	1gax_C_C930_C931	NAN	NANT	0	1.04	IC03
031	1gax_C_C931_U932	NAN	NANT	0	2.43	OP16
032	1gax_C_U932_C933	NAN	NANT	0	1.07	OP03
033	1gax_C_C933_A934	NAN	NANT	0	1.14	OP30
034	1gax_C_A934_C935	AAA	AA00	67	0.23	AA00
035	1gax_C_C935_A936	NAN	NANT	0	1.49	OP30
036	1gax_C_A936_C937	NAN	NANT	0	0.71	OP21
037	1gax_C_C937_G938	NAN	NANT	0	1.50	OP01
038	1gax_C_G938_C939	AAA	AA00	54	0.26	AA00
039	1gax_C_C939_G940	AAA	AA00	87	0.14	AA00
040	1gax_C_G940_A941	AAA	AA00	93	0.19	AA00
041	1gax_C_A941_G942	AAw	AA10	63	0.19	AA10
042	1gax_C_G942_A943	AAA	AA00	73	0.15	AA00
043	1gax_C_A943_G944	AAA	AA00	27	0.44	AA00
044	1gax_C_G944_G945	NAN	NANT	0	0.73	IC07
045	1gax_C_G945_U946	NAN	NANT	0	0.46	OP29
046	1gax_C_U946_C947	NAN	NANT	0	1.18	OP06
047	1gax_C_C947_G948	NAN	NANT	0	2.02	OP14
048	1gax_C_G948_U949	AAA	AA08	24	0.35	AA08
049	1gax_C_U949_A950	AAA	AA00	84	0.14	AA00
050	1gax_C_A950_G951	AAw	AA01	50	0.24	AA01
051	1gax_C_G951_G952	NAN	NANT	0	0.53	AA10
052	1gax_C_G952_U953	NAN	NANT	0	0.67	AA12
053	1gax_C_U953_U954	AAA	AA00	69	0.30	AA00
054	1gax_C_U954_C955	OPN	OP04	85	0.31	OP04
055	1gax_C_C955_A956	AAA	AA00	29	0.50	AA00
056	1gax_C_A956_A957	NAN	NANT	0	0.72	AB04
057	1gax_C_A957_G958	NAN	NANT	0	1.38	OP18
058	1gax_C_G958_U959	NAN	NANT	0	0.97	AAS1
059	1gax_C_U959_C960	NAN	NANT	0	0.33	OP12
060	1gax_C_C960_C961	AAA	AA00	71	0.20	AA00
061	1gax_C_C961_U962	AAA	AA00	60	0.29	AA00
062	1gax_C_U962_A963	AAw	AA06	72	0.15	AA06
063	1gax_C_A963_C964	AAA	AA08	93	0.17	AA08
064	1gax_C_C964_G965	AAA	AA00	78	0.14	AA00
065	1gax_C_G965_C966	AAw	AA11	90	0.15	AA11
066	1gax_C_C966_C967	AAA	AA08	20	0.46	AA08
067	1gax_C_C967_G968	AAA	AA00	66	0.22	AA00
068	1gax_C_G968_C969	AAw	AA01	76	0.27	AA01
069	1gax_C_C969_C970	AAA	AA08	93	0.19	AA08
070	1gax_C_C970_C971	AAA	AA00	87	0.10	AA00
071	1gax_C_C971_A972	NAN	NANT	0	0.92	AA11
072	1gax_C_A972_C973	NAN	NANT	0	0.43	OP03
073	1gax_C_C973_C974	NAN	NANT	0	1.12	OP29
074	1gax_C_C974_A975	NAN	NANT	0	1.86	IC03
075	1gax_D_G901_G902	AAw	AA01	42	0.28	AA01
076	1gax_D_G902_G903	NAN	NANT	0	0.69	AA11
077	1gax_D_G903_C904	AAw	AA01	60	0.25	AA01
078	1gax_D_C904_G905	AAA	AA00	60	0.24	AA00
079	1gax_D_G905_G906	AAA	AA00	86	0.20	AA00
080	1gax_D_G906_C907	NAN	NANT	0	0.47	AB03
081	1gax_D_C907_U908	NAN	NANT	0	0.65	OP11
082	1gax_D_U908_A909	NAN	NANT	0	1.22	IC03
083	1gax_D_A909_G910	NAN	NANT	0	1.60	OP25
084	1gax_D_G910_C911	AAA	AA00	60	0.22	AA00
085	1gax_D_C911_U912	AAA	AA00	78	0.24	AA00
086	1gax_D_U912_C913	AAw	AA01	70	0.22	AA01
087	1gax_D_C913_A914	AAw	AA10	40	0.35	AA10
088	1gax_D_A914_G915	AAA	AA08	43	0.52	AA08
089	1gax_D_G915_C916	NAN	NANT	0	0.61	AB04
090	1gax_D_C916_G917	NAN	NANT	0	1.78	OP18
091	1gax_D_G917_G918	NAN	NANT	0	0.39	IC04
092	1gax_D_G918_A919	NAN	NANT	0	1.66	OP07
093	1gax_D_A919_A920	NAN	NANT	0	1.40	OP17
094	1gax_D_A920_G921	NAN	NANT	0	1.15	AA11
095	1gax_D_G921_A922	AAA	AA08	67	0.28	AA08
096	1gax_D_A922_G923	AAA	AA00	78	0.16	AA00
097	1gax_D_G923_C924	AAA	AA08	86	0.15	AA08
098	1gax_D_C924_G925	AAA	AA00	85	0.26	AA00
099	1gax_D_G925_C926	AAA	AA00	86	0.24	AA00
100	1gax_D_C926_U927	AAA	AA00	32	0.36	AA00
101	1gax_D_U927_C928	AAA	AA00	77	0.17	AA00
102	1gax_D_C928_G929	AAA	AA00	69	0.23	AA00
103	1gax_D_G929_C930	AAw	AA01	59	0.32	AA01
104	1gax_D_C930_C931	NAN	NANT	0	1.22	OP11
105	1gax_D_C931_U932	NAN	NANT	0	2.25	OP16
106	1gax_D_U932_C933	NAN	NANT	0	1.29	OP03
107	1gax_D_C933_A934	NAN	NANT	0	1.08	OP30
108	1gax_D_A934_C935	AAA	AA00	60	0.20	AA00
109	1gax_D_C935_A936	NAN	NANT	0	0.75	IC02
110	1gax_D_A936_C937	NAN	NANT	0	0.77	OP21
111	1gax_D_C937_G938	NAN	NANT	0	1.56	OP01
112	1gax_D_G938_C939	AAA	AA00	13	0.33	AA00
113	1gax_D_C939_G940	AAA	AA00	45	0.23	AA00
114	1gax_D_G940_A941	AAA	AA00	87	0.22	AA00
115	1gax_D_A941_G942	AAw	AA01	90	0.14	AA01
116	1gax_D_G942_A943	AAA	AA00	82	0.13	AA00
117	1gax_D_A943_G944	AAA	AA08	64	0.36	AA08
118	1gax_D_G944_G945	NAN	NANT	0	0.58	IC03
119	1gax_D_G945_U946	NAN	NANT	0	1.41	OP17
120	1gax_D_U946_C947	NAN	NANT	0	1.05	OP06
121	1gax_D_C947_G948	NAN	NANT	0	1.44	OP05
122	1gax_D_G948_U949	AAA	AA00	47	0.25	AA00
123	1gax_D_U949_A950	AAA	AA00	65	0.20	AA00
124	1gax_D_A950_G951	AAw	AA01	43	0.29	AA01
125	1gax_D_G951_G952	NAN	NANT	0	0.51	AA10
126	1gax_D_G952_U953	AAA	AA08	33	0.38	AA08
127	1gax_D_U953_U954	AAA	AA00	84	0.21	AA00
128	1gax_D_U954_C955	OPN	OP03	43	0.35	OP03
129	1gax_D_C955_A956	AAA	AA00	54	0.39	AA00
130	1gax_D_A956_A957	NAN	NANT	0	1.15	AA07
131	1gax_D_A957_G958	NAN	NANT	0	1.72	OP02
132	1gax_D_G958_U959	NAN	NANT	0	0.91	AAS1
133	1gax_D_U959_C960	NAN	NANT	0	0.43	OP12
134	1gax_D_C960_C961	AAA	AA00	30	0.35	AA00
135	1gax_D_C961_U962	AAA	AA00	42	0.27	AA00
136	1gax_D_U962_A963	AAw	AA01	36	0.34	AA01
137	1gax_D_A963_C964	AAA	AA08	49	0.31	AA08
138	1gax_D_C964_G965	AAA	AA08	75	0.26	AA08
139	1gax_D_G965_C966	AAw	AA11	77	0.20	AA11
140	1gax_D_C966_C967	AAA	AA08	31	0.35	AA08
141	1gax_D_C967_G968	AAA	AA00	84	0.22	AA00
142	1gax_D_G968_C969	AAw	AA01	75	0.34	AA01
143	1gax_D_C969_C970	AAA	AA08	94	0.24	AA08
144	1gax_D_C970_C971	AAA	AA00	71	0.13	AA00
145	1gax_D_C971_A972	AAA	AA00	58	0.35	AA00
146	1gax_D_A972_C973	NAN	NANT	0	0.58	OP03
147	1gax_D_C973_C974	NAN	NANT	0	1.19	OP29
148	1gax_D_C974_A975	NAN	NANT	0	1.81	IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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