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Conformers: ABBIImiBZICOPNSYNN
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GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU).

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011g59_B_G501_G502AAAAA00150.40 AA00
0021g59_B_G502_C503AAAAA00580.20 AA00
0031g59_B_C503_C504AAAAA00710.17 AA00
0041g59_B_C504_C505AAAAA00740.18 AA00
0051g59_B_C505_C506AAAAA00570.26 AA00
0061g59_B_C506_A507NANNANT00.50 AB04
0071g59_B_A507_U508NANNANT00.94 OP11
0081g59_B_U508_C509NANNANT00.40 IC07
0091g59_B_C509_G510NANNANT01.32 OP12
0101g59_B_G510_U511AAAAA00480.29 AA00
0111g59_B_U511_C512AAAAA00580.20 AA00
0121g59_B_C512_U513AAwAA01170.35 AA01
0131g59_B_U513_A514AAuAA12520.34 AA12
0141g59_B_A514_G515AAAAA00170.51 AA00
0151g59_B_G515_C516NANNANT01.82 OP24
0161g59_B_C516_G517NANNANT01.70 IC02
0171g59_B_G517_G518NANNANT01.06 AB02
0181g59_B_G518_U519NANNANT01.83 OP16
0191g59_B_U519_U520NANNANT00.47 OP04
0201g59_B_U520_A521NANNANT00.74 OP29
0211g59_B_A521_G522AAuAA07190.31 AA07
0221g59_B_G522_G523AAAAA00720.16 AA00
0231g59_B_G523_A524AAAAA00710.15 AA00
0241g59_B_A524_C525AAAAA00720.19 AA00
0251g59_B_C525_G526AAAAA00510.38 AA00
0261g59_B_G526_C527AAAAA00590.28 AA00
0271g59_B_C527_G528AAAAA00820.13 AA00
0281g59_B_G528_G529AAAAA00870.15 AA00
0291g59_B_G529_C530AAAAA00790.12 AA00
0301g59_B_C530_C531AAAAA00820.20 AA00
0311g59_B_C531_C532AAAAA08180.32 AA08
0321g59_B_C532_U533AAAAA09160.40 AA09
0331g59_B_U533_C534NANNANT00.70 OP04
0341g59_B_C534_U535AAuAA12390.27 AA12
0351g59_B_U535_C536AAAAA00730.24 AA00
0361g59_B_C536_A537AAwAA01560.19 AA01
0371g59_B_A537_A538AAAAA00280.46 AA00
0381g59_B_A538_G539AAAAA00600.35 AA00
0391g59_B_G539_G540AAAAA00640.15 AA00
0401g59_B_G540_C541AAAAA00660.14 AA00
0411g59_B_C541_C542AAAAA00890.20 AA00
0421g59_B_C542_G543AAAAA00890.22 AA00
0431g59_B_G543_A544AAAAA00660.19 AA00
0441g59_B_A544_A545AAAAA00380.38 AA00
0451g59_B_A545_A546NANNANT00.84 AA07
0461g59_B_A546_C548NANNANT00.83 BB13
0471g59_B_C548_G549NANNANT01.04 OP05
0481g59_B_G549_G550AAAAA00540.19 AA00
0491g59_B_G550_G551AAAAA00600.28 AA00
0501g59_B_G551_G552AAwAA01200.28 AA01
0511g59_B_G552_G553NANNANT00.72 BA09
0521g59_B_G553_U554NANNANT00.60 AA03
0531g59_B_U554_U555AAAAA08480.25 AA08
0541g59_B_U555_C556NANNANT01.73 OP29
0551g59_B_C556_G557NANNANT00.86 BB02
0561g59_B_G557_A558NANNANT00.59 IC04
0571g59_B_A558_U559NANNANT01.52 OP18
0581g59_B_U559_U560A-BAB01110.56 AB01
0591g59_B_U560_C561OPNOP12110.31 OP12
0601g59_B_C561_C562AAAAA00130.38 AA00
0611g59_B_C562_C563AAAAA00300.20 AA00
0621g59_B_C563_C564AAAAA00600.17 AA00
0631g59_B_C564_C565AAAAA00710.17 AA00
0641g59_B_C565_U566AAAAA00570.29 AA00
0651g59_B_U566_G567AAAAA00520.21 AA00
0661g59_B_G567_G568AAAAA00680.16 AA00
0671g59_B_G568_G569AAAAA00690.19 AA00
0681g59_B_G569_G570AAAAA00670.16 AA00
0691g59_B_G570_U571AAAAA00450.32 AA00
0701g59_B_U571_C572AAwAA06180.27 AA06
0711g59_B_C572_A573NANNANT01.52 OP27
0721g59_B_A573_C574NANNANT01.39 OP17
0731g59_B_C574_C575NANNANT01.92 BB11
0741g59_B_C575_A576NANNANT01.76 BA16
0751g59_D_G501_G502AAAAA00260.35 AA00
0761g59_D_G502_C503AAAAA00590.21 AA00
0771g59_D_C503_C504AAAAA00660.17 AA00
0781g59_D_C504_C505AAAAA00770.16 AA00
0791g59_D_C505_C506AAAAA00550.26 AA00
0801g59_D_C506_A507NANNANT00.49 AB04
0811g59_D_A507_U508NANNANT00.92 OP11
0821g59_D_U508_C509NANNANT00.40 IC07
0831g59_D_C509_G510NANNANT01.81 OP04
0841g59_D_G510_U511AAAAA00460.27 AA00
0851g59_D_U511_C512AAAAA00610.19 AA00
0861g59_D_C512_U513AAwAA01170.34 AA01
0871g59_D_U513_A514AAuAA12470.34 AA12
0881g59_D_A514_G515AAAAA00180.52 AA00
0891g59_D_G515_C516NANNANT01.81 OP24
0901g59_D_C516_G517NANNANT01.70 IC02
0911g59_D_G517_G518NANNANT01.04 AB02
0921g59_D_G518_U519NANNANT01.83 OP16
0931g59_D_U519_U520NANNANT00.48 OP04
0941g59_D_U520_A521NANNANT00.73 OP29
0951g59_D_A521_G522AAuAA07160.33 AA07
0961g59_D_G522_G523AAAAA00680.17 AA00
0971g59_D_G523_A524AAAAA00800.14 AA00
0981g59_D_A524_C525AAAAA00680.20 AA00
0991g59_D_C525_G526AAAAA00540.37 AA00
1001g59_D_G526_C527AAAAA00680.27 AA00
1011g59_D_C527_G528AAAAA00870.13 AA00
1021g59_D_G528_G529AAAAA00900.14 AA00
1031g59_D_G529_C530AAAAA00770.13 AA00
1041g59_D_C530_C531AAAAA00800.22 AA00
1051g59_D_C531_C532AAAAA00430.39 AA00
1061g59_D_C532_U533AAAAA09360.39 AA09
1071g59_D_U533_C534NANNANT00.68 OP04
1081g59_D_C534_U535AAuAA12450.25 AA12
1091g59_D_U535_C536AAAAA08630.21 AA08
1101g59_D_C536_A537AAwAA01500.19 AA01
1111g59_D_A537_A538AAAAA00280.47 AA00
1121g59_D_A538_G539AAAAA00590.35 AA00
1131g59_D_G539_G540AAAAA00720.14 AA00
1141g59_D_G540_C541AAAAA00780.13 AA00
1151g59_D_C541_C542AAAAA00860.21 AA00
1161g59_D_C542_G543AAAAA00860.24 AA00
1171g59_D_G543_A544AAAAA00680.17 AA00
1181g59_D_A544_A545AAAAA00310.37 AA00
1191g59_D_A545_A546NANNANT00.83 AA07
1201g59_D_A546_C548NANNANT00.83 BB13
1211g59_D_C548_G549NANNANT01.04 OP05
1221g59_D_G549_G550AAAAA00610.23 AA00
1231g59_D_G550_G551AAAAA00630.28 AA00
1241g59_D_G551_G552AAwAA01160.28 AA01
1251g59_D_G552_G553NANNANT00.72 BA09
1261g59_D_G553_U554NANNANT00.63 AA03
1271g59_D_U554_U555AAAAA08540.23 AA08
1281g59_D_U555_C556NANNANT02.29 OP17
1291g59_D_C556_G557NANNANT00.74 AA03
1301g59_D_G557_A558NANNANT00.97 IC06
1311g59_D_A558_U559NANNANT01.68 OP18
1321g59_D_U559_U560NANNANT00.54 AA10
1331g59_D_U560_C561NANNANT00.43 OP12
1341g59_D_C561_C562AAAAA00120.40 AA00
1351g59_D_C562_C563AAAAA00300.19 AA00
1361g59_D_C563_C564AAAAA00530.18 AA00
1371g59_D_C564_C565AAAAA00680.16 AA00
1381g59_D_C565_U566AAAAA00590.27 AA00
1391g59_D_U566_G567AAAAA00480.19 AA00
1401g59_D_G567_G568AAAAA00560.18 AA00
1411g59_D_G568_G569AAAAA00620.21 AA00
1421g59_D_G569_G570AAAAA00580.16 AA00
1431g59_D_G570_U571AAAAA00500.25 AA00
1441g59_D_U571_C572NANNANT00.34 AA06
1451g59_D_C572_A573NANNANT00.80 OP19
1461g59_D_A573_C574NANNANT00.98 OP13
1471g59_D_C574_C575NANNANT02.15 OP1S
1481g59_D_C575_A576NANNANT01.03 OP24

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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