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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA

Results of the assignment of 165 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011g1x_D_A582_A583NANNANT00.81 AA04
0021g1x_D_A583_G584NANNANT00.58 AA04
0031g1x_D_G584_G585AAwAA01370.38 AA01
0041g1x_D_G585_C586AAAAA00560.28 AA00
0051g1x_D_C586_G587AAAAA00450.39 AA00
0061g1x_D_G587_G588AAuAA13120.42 AA13
0071g1x_D_G588_C589AAAAA00600.23 AA00
0081g1x_D_C589_C590AAAAA00740.19 AA00
0091g1x_D_C590_G591AAAAA00650.32 AA00
0101g1x_D_G591_A592OPNOP03500.15 OP03
0111g1x_D_A592_A593AAAAA08710.35 AA08
0121g1x_D_A593_A594AAAAA00670.26 AA00
0131g1x_D_A594_G649AAAAA04110.80 AA04
0141g1x_D_G649_G650AAAAA00800.23 AA00
0151g1x_D_G650_C651AAAAA00720.33 AA00
0161g1x_D_C651_U652AAAAA04770.34 AA04
0171g1x_D_U652_A653NANNANT01.52 ZZ01
0181g1x_D_A653_G654NANNANT01.34 AB02
0191g1x_D_G654_A655AAAAA00220.37 AA00
0201g1x_D_A655_C656AAAAA08880.19 AA08
0211g1x_D_C656_G657AAAAA00700.18 AA00
0221g1x_D_G657_G658AAAAA00630.27 AA00
0231g1x_D_G658_U659AAAAA00530.19 AA00
0241g1x_D_U659_G660AAAAA00420.21 AA00
0251g1x_D_G660_G661AAwAA01760.29 AA01
0261g1x_D_G661_G662AAAAA00340.38 AA00
0271g1x_D_G662_A663AAAAA00820.21 AA00
0281g1x_D_A663_G664AAAAA08690.28 AA08
0291g1x_D_G664_A665NANNANT01.13 OP29
0301g1x_D_A665_G666OPNOP29140.49 OP29
0311g1x_D_G666_G667AAAAA00620.23 AA00
0321g1x_D_G667_G668AAAAA00800.18 AA00
0331g1x_D_G668_U669AAAAA00790.18 AA00
0341g1x_D_U669_G670AAAAA00800.22 AA00
0351g1x_D_G670_G671AAwAA01740.17 AA01
0361g1x_D_G671_U672AAAAA08190.31 AA08
0371g1x_D_U672_G673AAAAA04580.37 AA04
0381g1x_D_G673_G674AAAAA00800.29 AA00
0391g1x_D_G674_A675AAAAA00600.22 AA00
0401g1x_E_A716_C717NANNANT01.93 OP01
0411g1x_E_C717_G718NANNANT01.49 OP27
0421g1x_E_G718_C719AAAAA08730.41 AA08
0431g1x_E_C719_C720AAAAA08220.60 AA08
0441g1x_E_C720_G721NANNANT00.45 ZZ01
0451g1x_E_G721_A722NANNANT00.51 ZZ1S
0461g1x_E_A722_U723NANNANT01.39 OP29
0471g1x_E_U723_G724NANNANT00.64 OP11
0481g1x_E_G724_G725AAAAA00200.37 AA00
0491g1x_E_G725_C726AAAAA00880.15 AA00
0501g1x_E_C726_G727AAAAA00890.15 AA00
0511g1x_E_G727_A728OPNOP03790.22 OP03
0521g1x_E_A728_A729AAAAA00790.18 AA00
0531g1x_E_A729_G730AAAAA00650.27 AA00
0541g1x_E_G730_G731NANNANT01.14 AA08
0551g1x_E_G731_C732AAAAA00660.21 AA00
0561g1x_E_C732_A733NANNANT00.62 IC02
0571g1x_E_A733_G734NANNANT01.71 OP16
0581g1x_E_G734_C735AAAAA00630.26 AA00
0591g1x_E_C735_C736AAAAA00750.25 AA00
0601g1x_E_C736_A737AAAAA00870.16 AA00
0611g1x_E_A737_C738AAAAA00830.10 AA00
0621g1x_E_C738_C739AAAAA00940.11 AA00
0631g1x_E_C739_U740AAAAA00910.28 AA00
0641g1x_E_U740_G741AAuAA12760.17 AA12
0651g1x_E_G741_G742AAAAA00820.18 AA00
0661g1x_E_G742_U743AAAAA00710.33 AA00
0671g1x_E_U743_C744AAAAA00870.17 AA00
0681g1x_E_C744_C745AAAAA00730.20 AA00
0691g1x_E_C745_A746AAAAA00730.25 AA00
0701g1x_E_A746_C747AAAAA00740.25 AA00
0711g1x_E_C747_C748NANNANT00.83 AA03
0721g1x_E_C748_C749NANNANT00.83 AA12
0731g1x_E_C749_G750AAAAA00600.31 AA00
0741g1x_E_G750_U751AAAAA00680.18 AA00
0751g1x_E_U751_G752NANNANT00.69 AB03
0761g1x_E_G752_A753NANNANT00.56 AA13
0771g1x_E_A753_C754NANNANT00.31 ZZ1S
0781g1x_E_C754_G755NANNANT01.49 OP01
0791g1x_E_G755_C756AAAAA00740.23 AA00
0801g1x_E_C756_U757AAAAA00630.48 AA00
0811g1x_E_U757_U758AAAAA00160.41 AA00
0821g1x_E_U758_U759AAAAA02500.38 AA02
0831g1x_I_A582_A583NANNANT00.46 AA00
0841g1x_I_A583_G584AAAAA00640.26 AA00
0851g1x_I_G584_G585AAAAA00560.23 AA00
0861g1x_I_G585_C586AAAAA00640.23 AA00
0871g1x_I_C586_G587AAAAA00700.29 AA00
0881g1x_I_G587_G588NANNANT01.22 IC03
0891g1x_I_G588_C589NANNANT00.45 AA12
0901g1x_I_C589_C590AAwAA10380.34 AA10
0911g1x_I_C590_G591AAwAA11790.35 AA11
0921g1x_I_G591_A592NANNANT00.84 OP05
0931g1x_I_A592_A593AAwAA06380.54 AA06
0941g1x_I_A593_A594NANNANT00.43 AA06
0951g1x_I_A594_G649NANNANT01.29 AA04
0961g1x_I_G649_G650AAwAA01250.39 AA01
0971g1x_I_G650_C651NANNANT00.72 AA03
0981g1x_I_C651_U652AAwAA01170.42 AA01
0991g1x_I_U652_A653NANNANT01.72 AB02
1001g1x_I_A653_G654NANNANT01.80 OP26
1011g1x_I_G654_A655AAAAA00210.38 AA00
1021g1x_I_A655_C656AAAAA00890.11 AA00
1031g1x_I_C656_G657AAAAA00770.21 AA00
1041g1x_I_G657_G658AAAAA00630.29 AA00
1051g1x_I_G658_U659AAAAA00790.20 AA00
1061g1x_I_U659_G660AAAAA00570.23 AA00
1071g1x_I_G660_G661AAwAA01750.29 AA01
1081g1x_I_G661_G662AAAAA08270.37 AA08
1091g1x_I_G662_A663AAAAA00900.12 AA00
1101g1x_I_A663_G664AAAAA00880.13 AA00
1111g1x_I_G664_A665NANNANT01.18 OP29
1121g1x_I_A665_G666NANNANT00.44 OP29
1131g1x_I_G666_G667AAAAA08560.26 AA08
1141g1x_I_G667_G668AAAAA00710.18 AA00
1151g1x_I_G668_U669AAAAA00790.22 AA00
1161g1x_I_U669_G670AAAAA00900.17 AA00
1171g1x_I_G670_G671AAwAA01610.21 AA01
1181g1x_I_G671_U672AAAAA08270.46 AA08
1191g1x_I_U672_G673AAAAA04560.55 AA04
1201g1x_I_G673_G674AAAAA00380.32 AA00
1211g1x_I_G674_A675AAAAA00860.16 AA00
1221g1x_I_A675_A676AAAAA04650.41 AA04
1231g1x_J_A716_C717NANNANT01.37 AA10
1241g1x_J_C717_G718NANNANT00.52 AA13
1251g1x_J_G718_C719AAAAA08580.45 AA08
1261g1x_J_C719_C720AAAAA08320.55 AA08
1271g1x_J_C720_G721NANNANT00.36 ZZ01
1281g1x_J_G721_A722NANNANT00.52 ZZ1S
1291g1x_J_A722_U723NANNANT01.65 OP28
1301g1x_J_U723_G724NANNANT01.87 OP01
1311g1x_J_G724_G725AAAAA00820.24 AA00
1321g1x_J_G725_C726AAAAA00770.22 AA00
1331g1x_J_C726_G727AAAAA00890.14 AA00
1341g1x_J_G727_A728OPNOP03740.27 OP03
1351g1x_J_A728_A729AAAAA00760.21 AA00
1361g1x_J_A729_G730AAAAA00650.23 AA00
1371g1x_J_G730_G731NANNANT01.11 AA08
1381g1x_J_G731_C732AAAAA00520.25 AA00
1391g1x_J_C732_A733NANNANT00.67 AB04
1401g1x_J_A733_G734NANNANT01.77 OP16
1411g1x_J_G734_C735AAAAA00840.21 AA00
1421g1x_J_C735_C736AAAAA00950.14 AA00
1431g1x_J_C736_A737AAAAA00950.10 AA00
1441g1x_J_A737_C738AAAAA00850.11 AA00
1451g1x_J_C738_C739AAAAA00930.14 AA00
1461g1x_J_C739_U740AAAAA00870.26 AA00
1471g1x_J_U740_G741AAuAA12690.19 AA12
1481g1x_J_G741_G742AAAAA00830.19 AA00
1491g1x_J_G742_U743AAAAA00790.34 AA00
1501g1x_J_U743_C744AAAAA00910.15 AA00
1511g1x_J_C744_C745AAAAA00890.16 AA00
1521g1x_J_C745_A746AAAAA08870.21 AA08
1531g1x_J_A746_C747AAAAA00490.38 AA00
1541g1x_J_C747_C748AAAAA08280.69 AA08
1551g1x_J_C748_C749NANNANT01.09 AA04
1561g1x_J_C749_G750AAAAA00480.35 AA00
1571g1x_J_G750_U751AAAAA00790.20 AA00
1581g1x_J_U751_G752AAwAA05280.39 AA05
1591g1x_J_G752_A753NANNANT00.73 IC04
1601g1x_J_A753_C754NANNANT00.54 ZZ1S
1611g1x_J_C754_G755NANNANT01.53 OP01
1621g1x_J_G755_C756AAAAA00720.21 AA00
1631g1x_J_C756_U757AAAAA00290.38 AA00
1641g1x_J_U757_U758AAAAA00440.30 AA00
1651g1x_J_U758_U759AAAAA00360.31 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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