Conformers:
ABBIImiBZICOPNSYNN
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NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1fqz_A_G1_C2 | AAA | AA08 | 59 | 0.35 |
| 02 | 1fqz_A_C2_C3 | AAA | AA00 | 82 | 0.15 |
| 03 | 1fqz_A_C3_G4 | AAA | AA00 | 39 | 0.45 |
| 04 | 1fqz_A_G4_A5 | ZZZ | ZZ01 | 68 | 0.26 |
| 05 | 1fqz_A_A5_G6 | NAN | NANT | 0 | 1.42 |
| 06 | 1fqz_A_G6_U7 | OPN | OP15 | 50 | 0.38 |
| 07 | 1fqz_A_U7_A8 | AAA | AA00 | 65 | 0.21 |
| 08 | 1fqz_A_A8_G9 | AAA | AA08 | 53 | 0.46 |
| 09 | 1fqz_A_G9_U10 | AAA | AA00 | 80 | 0.18 |
| 10 | 1fqz_A_U10_G11 | AAA | AA08 | 81 | 0.24 |
| 11 | 1fqz_A_G11_U12 | AAA | AA08 | 79 | 0.35 |
| 12 | 1fqz_A_U12_U13 | AAu | AA12 | 58 | 0.43 |
| 13 | 1fqz_A_U13_G14 | OPN | OP04 | 69 | 0.17 |
| 14 | 1fqz_A_G14_G15 | AAA | AA00 | 63 | 0.24 |
| 15 | 1fqz_A_G15_G16 | NAN | NANT | 0 | 1.33 |
| 16 | 1fqz_A_G16_U17 | NAN | NANT | 0 | 0.61 |
| 17 | 1fqz_A_U17_C18 | OPN | OP11 | 43 | 0.77 |
| 18 | 1fqz_A_C18_G19 | AAA | AA00 | 75 | 0.18 |
| 19 | 1fqz_A_G19_C20 | AAA | AA00 | 67 | 0.25 |
| 20 | 1fqz_A_C20_G21 | AAA | AA00 | 14 | 0.49 |
| 21 | 1fqz_A_G21_A22 | NAN | NANT | 0 | 0.32 |
| 22 | 1fqz_A_A22_A23 | AAA | AA08 | 77 | 0.23 |
| 23 | 1fqz_A_A23_A24 | AAA | AA00 | 76 | 0.15 |
| 24 | 1fqz_A_A24_G25 | AAA | AA08 | 54 | 0.42 |
| 25 | 1fqz_A_G25_G26 | AAA | AA00 | 76 | 0.18 |
| 26 | 1fqz_A_G26_C27 | AAA | AA00 | 71 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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