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Conformers: ABBIImiBZICOPNSYNN
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HYPERMODIFIED NUCLEOSIDES IN THE ANTICODON OF TRNALYS STABILIZE A CANONICAL U-TURN STRUCTURE

Results of the assignment of 280 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011fl8-m10_A_U27_C28AAAAA00420.41 AA00
0021fl8-m11_A_U27_C28AAAAA00530.33 AA00
0031fl8-m12_A_U27_C28AAAAA00520.36 AA00
0041fl8-m13_A_U27_C28AAAAA00430.40 AA00
0051fl8-m14_A_U27_C28AAAAA00400.42 AA00
0061fl8-m15_A_U27_C28AAAAA00620.29 AA00
0071fl8-m16_A_U27_C28AAAAA00560.34 AA00
0081fl8-m17_A_U27_C28AAAAA00570.32 AA00
0091fl8-m18_A_U27_C28AAAAA00560.34 AA00
0101fl8-m19_A_U27_C28AAAAA00450.40 AA00
0111fl8-m1_A_U27_C28AAAAA00540.35 AA00
0121fl8-m20_A_U27_C28AAAAA00520.34 AA00
0131fl8-m2_A_U27_C28AAAAA00510.36 AA00
0141fl8-m3_A_U27_C28AAAAA00420.43 AA00
0151fl8-m4_A_U27_C28AAAAA00450.39 AA00
0161fl8-m5_A_U27_C28AAAAA00500.36 AA00
0171fl8-m6_A_U27_C28AAAAA00610.30 AA00
0181fl8-m7_A_U27_C28AAAAA00570.33 AA00
0191fl8-m8_A_U27_C28AAAAA00580.32 AA00
0201fl8-m9_A_U27_C28AAAAA00570.33 AA00
0211fl8-m10_A_C28_A29AAAAA00680.19 AA00
0221fl8-m11_A_C28_A29AAAAA00560.28 AA00
0231fl8-m12_A_C28_A29AAAAA00680.18 AA00
0241fl8-m13_A_C28_A29AAAAA00580.25 AA00
0251fl8-m14_A_C28_A29AAAAA00700.19 AA00
0261fl8-m15_A_C28_A29AAAAA00650.18 AA00
0271fl8-m16_A_C28_A29AAAAA00700.19 AA00
0281fl8-m17_A_C28_A29AAAAA00610.21 AA00
0291fl8-m18_A_C28_A29AAAAA00690.18 AA00
0301fl8-m19_A_C28_A29AAAAA00690.19 AA00
0311fl8-m1_A_C28_A29AAAAA00570.22 AA00
0321fl8-m20_A_C28_A29AAAAA00620.20 AA00
0331fl8-m2_A_C28_A29AAAAA00660.19 AA00
0341fl8-m3_A_C28_A29AAAAA00660.19 AA00
0351fl8-m4_A_C28_A29AAAAA00650.19 AA00
0361fl8-m5_A_C28_A29AAAAA00660.18 AA00
0371fl8-m6_A_C28_A29AAAAA00670.19 AA00
0381fl8-m7_A_C28_A29AAAAA00680.18 AA00
0391fl8-m8_A_C28_A29AAAAA00660.19 AA00
0401fl8-m9_A_C28_A29AAAAA00650.19 AA00
0411fl8-m10_A_A29_G30AAAAA00660.15 AA00
0421fl8-m11_A_A29_G30AAAAA00680.16 AA00
0431fl8-m12_A_A29_G30AAAAA00670.16 AA00
0441fl8-m13_A_A29_G30AAAAA00680.21 AA00
0451fl8-m14_A_A29_G30AAAAA00690.16 AA00
0461fl8-m15_A_A29_G30AAAAA00650.17 AA00
0471fl8-m16_A_A29_G30AAAAA00710.21 AA00
0481fl8-m17_A_A29_G30AAAAA00650.16 AA00
0491fl8-m18_A_A29_G30AAAAA00700.16 AA00
0501fl8-m19_A_A29_G30AAAAA00640.17 AA00
0511fl8-m1_A_A29_G30AAAAA00690.16 AA00
0521fl8-m20_A_A29_G30AAAAA00640.17 AA00
0531fl8-m2_A_A29_G30AAAAA00680.17 AA00
0541fl8-m3_A_A29_G30AAAAA00690.16 AA00
0551fl8-m4_A_A29_G30AAAAA00660.16 AA00
0561fl8-m5_A_A29_G30AAAAA00670.18 AA00
0571fl8-m6_A_A29_G30AAAAA00660.16 AA00
0581fl8-m7_A_A29_G30AAAAA00670.15 AA00
0591fl8-m8_A_A29_G30AAAAA00680.17 AA00
0601fl8-m9_A_A29_G30AAAAA00660.16 AA00
0611fl8-m10_A_G30_A31AAAAA00660.23 AA00
0621fl8-m11_A_G30_A31AAAAA00700.20 AA00
0631fl8-m12_A_G30_A31AAAAA00710.19 AA00
0641fl8-m13_A_G30_A31AAAAA00700.20 AA00
0651fl8-m14_A_G30_A31AAAAA00700.20 AA00
0661fl8-m15_A_G30_A31AAAAA00680.21 AA00
0671fl8-m16_A_G30_A31AAAAA00680.19 AA00
0681fl8-m17_A_G30_A31AAAAA00710.20 AA00
0691fl8-m18_A_G30_A31AAAAA00700.19 AA00
0701fl8-m19_A_G30_A31AAAAA00690.21 AA00
0711fl8-m1_A_G30_A31AAAAA00700.19 AA00
0721fl8-m20_A_G30_A31AAAAA00690.21 AA00
0731fl8-m2_A_G30_A31AAAAA00650.22 AA00
0741fl8-m3_A_G30_A31AAAAA00680.21 AA00
0751fl8-m4_A_G30_A31AAAAA00690.20 AA00
0761fl8-m5_A_G30_A31AAAAA00680.21 AA00
0771fl8-m6_A_G30_A31AAAAA00480.33 AA00
0781fl8-m7_A_G30_A31AAAAA00670.21 AA00
0791fl8-m8_A_G30_A31AAAAA00700.20 AA00
0801fl8-m9_A_G30_A31AAAAA00690.18 AA00
0811fl8-m10_A_A31_C32AAAAA00720.32 AA00
0821fl8-m11_A_A31_C32AAAAA00730.34 AA00
0831fl8-m12_A_A31_C32AAAAA00770.27 AA00
0841fl8-m13_A_A31_C32AAAAA00770.28 AA00
0851fl8-m14_A_A31_C32AAAAA00750.30 AA00
0861fl8-m15_A_A31_C32AAAAA00780.29 AA00
0871fl8-m16_A_A31_C32AAAAA00760.28 AA00
0881fl8-m17_A_A31_C32AAAAA00760.29 AA00
0891fl8-m18_A_A31_C32AAAAA00770.28 AA00
0901fl8-m19_A_A31_C32AAAAA00720.33 AA00
0911fl8-m1_A_A31_C32AAAAA00770.29 AA00
0921fl8-m20_A_A31_C32AAAAA00760.30 AA00
0931fl8-m2_A_A31_C32AAAAA00770.30 AA00
0941fl8-m3_A_A31_C32AAAAA00770.28 AA00
0951fl8-m4_A_A31_C32AAAAA00760.29 AA00
0961fl8-m5_A_A31_C32AAAAA00780.27 AA00
0971fl8-m6_A_A31_C32AAAAA00680.38 AA00
0981fl8-m7_A_A31_C32AAAAA00760.31 AA00
0991fl8-m8_A_A31_C32AAAAA00780.26 AA00
1001fl8-m9_A_A31_C32AAAAA00730.31 AA00
1011fl8-m10_A_C32_U33AAAAA08230.55 AA08
1021fl8-m11_A_C32_U33AAAAA08130.60 AA08
1031fl8-m12_A_C32_U33NANNANT00.84 AA12
1041fl8-m13_A_C32_U33AAAAA08140.54 AA08
1051fl8-m14_A_C32_U33AAAAA08180.55 AA08
1061fl8-m15_A_C32_U33AAAAA08100.58 AA08
1071fl8-m16_A_C32_U33NANNANT00.77 AA12
1081fl8-m17_A_C32_U33AAAAA08130.53 AA08
1091fl8-m18_A_C32_U33AAAAA08110.55 AA08
1101fl8-m19_A_C32_U33AAAAA08150.56 AA08
1111fl8-m1_A_C32_U33AAAAA0880.56 AA08
1121fl8-m20_A_C32_U33AAAAA08200.53 AA08
1131fl8-m2_A_C32_U33AAAAA08110.58 AA08
1141fl8-m3_A_C32_U33AAAAA08190.54 AA08
1151fl8-m4_A_C32_U33AAAAA08180.54 AA08
1161fl8-m5_A_C32_U33AAAAA08190.56 AA08
1171fl8-m6_A_C32_U33AAAAA0890.57 AA08
1181fl8-m7_A_C32_U33AAAAA08180.56 AA08
1191fl8-m8_A_C32_U33AAAAA0890.57 AA08
1201fl8-m9_A_C32_U33AAAAA0890.55 AA08
1211fl8-m10_A_U33_U8U34NANNANT00.50 OP04
1221fl8-m11_A_U33_U8U34NANNANT00.48 OP04
1231fl8-m12_A_U33_U8U34NANNANT00.48 OP04
1241fl8-m13_A_U33_U8U34NANNANT00.49 OP04
1251fl8-m14_A_U33_U8U34NANNANT00.48 OP04
1261fl8-m15_A_U33_U8U34NANNANT00.51 OP04
1271fl8-m16_A_U33_U8U34NANNANT00.50 OP04
1281fl8-m17_A_U33_U8U34NANNANT00.48 OP04
1291fl8-m18_A_U33_U8U34NANNANT00.50 OP04
1301fl8-m19_A_U33_U8U34NANNANT00.49 OP04
1311fl8-m1_A_U33_U8U34NANNANT00.50 OP04
1321fl8-m20_A_U33_U8U34NANNANT00.48 OP04
1331fl8-m2_A_U33_U8U34NANNANT00.49 OP04
1341fl8-m3_A_U33_U8U34NANNANT00.50 OP04
1351fl8-m4_A_U33_U8U34NANNANT00.49 OP04
1361fl8-m5_A_U33_U8U34NANNANT00.50 OP04
1371fl8-m6_A_U33_U8U34NANNANT00.51 OP04
1381fl8-m7_A_U33_U8U34NANNANT00.50 OP04
1391fl8-m8_A_U33_U8U34NANNANT00.49 OP04
1401fl8-m9_A_U33_U8U34NANNANT00.49 OP04
1411fl8-m10_A_U8U34_U35AAAAA04600.45 AA04
1421fl8-m11_A_U8U34_U35AAAAA04360.56 AA04
1431fl8-m12_A_U8U34_U35AAAAA04640.49 AA04
1441fl8-m13_A_U8U34_U35AAAAA04510.55 AA04
1451fl8-m14_A_U8U34_U35AAAAA04570.53 AA04
1461fl8-m15_A_U8U34_U35AAAAA04710.43 AA04
1471fl8-m16_A_U8U34_U35AAAAA04560.50 AA04
1481fl8-m17_A_U8U34_U35AAAAA04510.52 AA04
1491fl8-m18_A_U8U34_U35AAAAA04590.47 AA04
1501fl8-m19_A_U8U34_U35AAAAA04520.49 AA04
1511fl8-m1_A_U8U34_U35AAAAA04500.53 AA04
1521fl8-m20_A_U8U34_U35AAAAA04530.53 AA04
1531fl8-m2_A_U8U34_U35AAAAA04470.55 AA04
1541fl8-m3_A_U8U34_U35AAAAA04530.49 AA04
1551fl8-m4_A_U8U34_U35AAAAA04490.51 AA04
1561fl8-m5_A_U8U34_U35AAAAA04630.43 AA04
1571fl8-m6_A_U8U34_U35AAAAA04560.50 AA04
1581fl8-m7_A_U8U34_U35AAAAA04670.45 AA04
1591fl8-m8_A_U8U34_U35AAAAA04540.48 AA04
1601fl8-m9_A_U8U34_U35AAAAA04510.52 AA04
1611fl8-m10_A_U35_U36AAAAA00500.33 AA00
1621fl8-m11_A_U35_U36AAAAA00290.34 AA00
1631fl8-m12_A_U35_U36AAAAA00470.30 AA00
1641fl8-m13_A_U35_U36AAAAA00480.33 AA00
1651fl8-m14_A_U35_U36AAAAA00410.32 AA00
1661fl8-m15_A_U35_U36AAAAA00550.31 AA00
1671fl8-m16_A_U35_U36AAAAA00480.34 AA00
1681fl8-m17_A_U35_U36AAAAA00410.38 AA00
1691fl8-m18_A_U35_U36AAAAA00510.32 AA00
1701fl8-m19_A_U35_U36AAAAA00440.34 AA00
1711fl8-m1_A_U35_U36AAAAA00450.33 AA00
1721fl8-m20_A_U35_U36AAAAA00480.34 AA00
1731fl8-m2_A_U35_U36AAAAA00410.33 AA00
1741fl8-m3_A_U35_U36AAAAA00460.33 AA00
1751fl8-m4_A_U35_U36AAAAA00420.34 AA00
1761fl8-m5_A_U35_U36AAAAA00510.34 AA00
1771fl8-m6_A_U35_U36AAAAA00490.31 AA00
1781fl8-m7_A_U35_U36AAAAA00550.33 AA00
1791fl8-m8_A_U35_U36AAAAA00450.33 AA00
1801fl8-m9_A_U35_U36AAAAA00390.39 AA00
1811fl8-m10_A_U36_T6A37AAAAA00570.22 AA00
1821fl8-m11_A_U36_T6A37AAAAA00550.32 AA00
1831fl8-m12_A_U36_T6A37AAAAA00570.31 AA00
1841fl8-m13_A_U36_T6A37AAAAA00590.25 AA00
1851fl8-m14_A_U36_T6A37AAAAA00530.28 AA00
1861fl8-m15_A_U36_T6A37AAAAA00550.23 AA00
1871fl8-m16_A_U36_T6A37AAAAA00470.26 AA00
1881fl8-m17_A_U36_T6A37AAAAA00560.23 AA00
1891fl8-m18_A_U36_T6A37AAAAA00510.25 AA00
1901fl8-m19_A_U36_T6A37AAAAA00600.25 AA00
1911fl8-m1_A_U36_T6A37AAAAA00530.24 AA00
1921fl8-m20_A_U36_T6A37AAAAA00630.24 AA00
1931fl8-m2_A_U36_T6A37AAAAA00610.27 AA00
1941fl8-m3_A_U36_T6A37AAAAA00550.23 AA00
1951fl8-m4_A_U36_T6A37AAAAA00450.24 AA00
1961fl8-m5_A_U36_T6A37AAAAA00580.22 AA00
1971fl8-m6_A_U36_T6A37AAAAA00560.29 AA00
1981fl8-m7_A_U36_T6A37AAAAA00570.23 AA00
1991fl8-m8_A_U36_T6A37AAAAA04890.16 AA04
2001fl8-m9_A_U36_T6A37AAAAA00550.23 AA00
2011fl8-m10_A_T6A37_A38AAAAA04820.30 AA04
2021fl8-m11_A_T6A37_A38AAAAA04840.33 AA04
2031fl8-m12_A_T6A37_A38AAAAA04850.29 AA04
2041fl8-m13_A_T6A37_A38AAAAA04830.33 AA04
2051fl8-m14_A_T6A37_A38AAAAA04820.34 AA04
2061fl8-m15_A_T6A37_A38AAAAA04820.28 AA04
2071fl8-m16_A_T6A37_A38AAAAA04810.25 AA04
2081fl8-m17_A_T6A37_A38AAAAA04830.29 AA04
2091fl8-m18_A_T6A37_A38AAAAA04800.26 AA04
2101fl8-m19_A_T6A37_A38AAAAA04840.30 AA04
2111fl8-m1_A_T6A37_A38AAAAA04810.27 AA04
2121fl8-m20_A_T6A37_A38AAAAA04830.33 AA04
2131fl8-m2_A_T6A37_A38AAAAA04830.33 AA04
2141fl8-m3_A_T6A37_A38AAAAA04820.32 AA04
2151fl8-m4_A_T6A37_A38AAAAA04840.30 AA04
2161fl8-m5_A_T6A37_A38AAAAA04820.28 AA04
2171fl8-m6_A_T6A37_A38AAAAA04820.34 AA04
2181fl8-m7_A_T6A37_A38AAAAA04840.29 AA04
2191fl8-m8_A_T6A37_A38AAAAA04830.32 AA04
2201fl8-m9_A_T6A37_A38AAAAA04840.30 AA04
2211fl8-m10_A_C40_U41AAAAA00680.25 AA00
2221fl8-m11_A_C40_U41AAAAA00700.27 AA00
2231fl8-m12_A_C40_U41AAAAA00710.25 AA00
2241fl8-m13_A_C40_U41AAAAA00610.32 AA00
2251fl8-m14_A_C40_U41AAAAA00640.28 AA00
2261fl8-m15_A_C40_U41AAAAA00690.25 AA00
2271fl8-m16_A_C40_U41AAAAA00600.33 AA00
2281fl8-m17_A_C40_U41AAAAA00540.28 AA00
2291fl8-m18_A_C40_U41AAAAA00690.27 AA00
2301fl8-m19_A_C40_U41AAAAA00660.28 AA00
2311fl8-m1_A_C40_U41AAAAA00620.29 AA00
2321fl8-m20_A_C40_U41AAAAA00680.26 AA00
2331fl8-m2_A_C40_U41AAAAA00710.27 AA00
2341fl8-m3_A_C40_U41AAAAA00630.29 AA00
2351fl8-m4_A_C40_U41AAAAA00680.27 AA00
2361fl8-m5_A_C40_U41AAAAA00530.31 AA00
2371fl8-m6_A_C40_U41AAAAA00660.26 AA00
2381fl8-m7_A_C40_U41AAAAA00690.24 AA00
2391fl8-m8_A_C40_U41AAAAA00640.28 AA00
2401fl8-m9_A_C40_U41AAAAA00650.28 AA00
2411fl8-m10_A_U41_G42AAAAA00610.20 AA00
2421fl8-m11_A_U41_G42AAAAA00610.21 AA00
2431fl8-m12_A_U41_G42AAAAA00680.19 AA00
2441fl8-m13_A_U41_G42AAAAA00660.19 AA00
2451fl8-m14_A_U41_G42AAAAA00650.19 AA00
2461fl8-m15_A_U41_G42AAAAA00630.20 AA00
2471fl8-m16_A_U41_G42AAAAA00660.18 AA00
2481fl8-m17_A_U41_G42AAAAA00650.20 AA00
2491fl8-m18_A_U41_G42AAAAA00690.19 AA00
2501fl8-m19_A_U41_G42AAAAA00690.19 AA00
2511fl8-m1_A_U41_G42AAAAA00670.20 AA00
2521fl8-m20_A_U41_G42AAAAA00630.20 AA00
2531fl8-m2_A_U41_G42AAAAA00630.20 AA00
2541fl8-m3_A_U41_G42AAAAA00660.19 AA00
2551fl8-m4_A_U41_G42AAAAA00660.19 AA00
2561fl8-m5_A_U41_G42AAAAA00690.18 AA00
2571fl8-m6_A_U41_G42AAAAA00600.24 AA00
2581fl8-m7_A_U41_G42AAAAA00650.19 AA00
2591fl8-m8_A_U41_G42AAAAA00640.19 AA00
2601fl8-m9_A_U41_G42AAAAA00660.19 AA00
2611fl8-m10_A_G42_A43AAAAA00610.22 AA00
2621fl8-m11_A_G42_A43AAAAA00610.20 AA00
2631fl8-m12_A_G42_A43AAAAA00580.23 AA00
2641fl8-m13_A_G42_A43AAAAA00590.23 AA00
2651fl8-m14_A_G42_A43AAAAA00610.24 AA00
2661fl8-m15_A_G42_A43AAAAA00650.18 AA00
2671fl8-m16_A_G42_A43AAAAA00620.19 AA00
2681fl8-m17_A_G42_A43AAAAA00670.18 AA00
2691fl8-m18_A_G42_A43AAAAA00500.20 AA00
2701fl8-m19_A_G42_A43AAAAA00480.21 AA00
2711fl8-m1_A_G42_A43AAAAA00640.18 AA00
2721fl8-m20_A_G42_A43AAAAA00660.19 AA00
2731fl8-m2_A_G42_A43AAAAA00640.20 AA00
2741fl8-m3_A_G42_A43AAAAA00630.19 AA00
2751fl8-m4_A_G42_A43AAAAA00630.21 AA00
2761fl8-m5_A_G42_A43AAAAA00520.20 AA00
2771fl8-m6_A_G42_A43AAAAA00660.19 AA00
2781fl8-m7_A_G42_A43AAAAA00500.22 AA00
2791fl8-m8_A_G42_A43AAAAA00640.17 AA00
2801fl8-m9_A_G42_A43AAAAA00610.17 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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