Conformers:
ABBIImiBZICOPNSYNN
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THE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1fix_A_U1_U2 | AAA | AA00 | 83 | 0.18 |
| 02 | 1fix_A_U2_C3 | AAA | AA08 | 69 | 0.21 |
| 03 | 1fix_A_C3_G4 | AAA | AA00 | 81 | 0.17 |
| 04 | 1fix_A_G4_G5 | AAA | AA00 | 9 | 0.33 |
| 05 | 1fix_A_G5_G6 | AAw | AA01 | 83 | 0.21 |
| 06 | 1fix_A_G6_C7 | AAA | AA08 | 88 | 0.11 |
| 07 | 1fix_A_C7_G8 | AAA | AA00 | 68 | 0.16 |
| 08 | 1fix_A_G8_C9 | AAA | AA00 | 87 | 0.13 |
| 09 | 1fix_A_C9_C10 | AAA | AA00 | 80 | 0.21 |
| 10 | 1fix_B_DG11_DG12 | AAA | AA00 | 91 | 0.20 |
| 11 | 1fix_B_DG12_DC13 | AAA | AA00 | 83 | 0.17 |
| 12 | 1fix_B_DC13_DG14 | AAA | AA00 | 81 | 0.14 |
| 13 | 1fix_B_DG14_DC15 | AAA | AA00 | 92 | 0.12 |
| 14 | 1fix_B_DC15_DC16 | AAA | AA03 | 54 | 0.29 |
| 15 | 1fix_B_DC16_DC17 | NAN | NANT | 0 | 0.32 |
| 16 | 1fix_B_DC17_DG18 | NAN | NANT | 0 | 0.46 |
| 17 | 1fix_B_DG18_DA19 | NAN | NANT | 0 | 0.67 |
| 18 | 1fix_B_DA19_DA20 | BBw | BB03 | 45 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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