DNATCO v4.1: results

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	1fir_A_G1_C2	AAA	AA08	89	0.23	AA08
02	1fir_A_C2_C3	AAA	AA00	87	0.15	AA00
03	1fir_A_C3_C4	AAA	AA00	64	0.17	AA00
04	1fir_A_C4_G5	AAA	AA00	67	0.16	AA00
05	1fir_A_G5_2MG6	AAA	AA00	61	0.19	AA00
06	1fir_A_2MG6_A7	A-B	AB04	58	0.32	AB04
07	1fir_A_A7_U8	OPN	OP11	39	0.51	OP11
08	1fir_A_U8_A9	NAN	NANT	0	0.85	IC02
09	1fir_A_A9_2MG10	NAN	NANT	0	1.56	OP25
10	1fir_A_2MG10_C11	NAN	NANT	0	0.45	AA01
11	1fir_A_C11_U12	AAA	AA08	68	0.24	AA08
12	1fir_A_U12_C13	AAw	AA01	79	0.21	AA01
13	1fir_A_C13_A14	AAA	AA00	43	0.33	AA00
14	1fir_A_A14_G15	AAA	AA00	53	0.41	AA00
15	1fir_A_G15_H2U16	NAN	NANT	0	0.83	OP06
16	1fir_A_H2U16_C17	NAN	NANT	0	1.21	OP04
17	1fir_A_C17_G18	NAN	NANT	0	1.48	OP14
18	1fir_A_G18_G.A19	NAN	NANT	0	0.74	IC04
19	1fir_A_G18_G.B19	NAN	NANT	0	0.73	IC04
20	1fir_A_G.A19_H2U.A20	NAN	NANT	0	2.00	OP26
21	1fir_A_G.B19_H2U.B20	NAN	NANT	0	0.94	OP16
22	1fir_A_H2U.A20_A21	NAN	NANT	0	0.54	OP13
23	1fir_A_H2U.B20_A21	NAN	NANT	0	0.54	OP13
24	1fir_A_A21_G22	NAN	NANT	0	0.65	OP08
25	1fir_A_G22_A23	AAA	AA00	77	0.21	AA00
26	1fir_A_A23_G24	AAA	AA00	56	0.16	AA00
27	1fir_A_G24_C25	AAA	AA00	76	0.19	AA00
28	1fir_A_C25_A26	AAA	AA00	75	0.35	AA00
29	1fir_A_C28_A29	AAA	AA00	81	0.15	AA00
30	1fir_A_A29_G30	AAA	AA00	43	0.23	AA00
31	1fir_A_G30_A31	AAA	AA00	53	0.23	AA00
32	1fir_A_A31_C32	AAA	AA00	61	0.38	AA00
33	1fir_A_C32_U33	AAA	AA00	14	0.56	AA00
34	1fir_A_U33_70U34	OPN	OP04	70	0.34	OP04
35	1fir_A_70U34_U35	AAA	AA08	79	0.18	AA08
36	1fir_A_U35_U36	AAA	AA00	14	0.41	AA00
37	1fir_A_U36_12A37	AAw	AA01	45	0.29	AA01
38	1fir_A_12A37_A38	AAA	AA08	41	0.47	AA08
39	1fir_A_C40_U41	AAA	AA00	85	0.21	AA00
40	1fir_A_U41_G42	AAA	AA00	73	0.17	AA00
41	1fir_A_G42_A43	AAA	AA00	63	0.22	AA00
42	1fir_A_A43_G44	AAA	AA08	13	0.45	AA08
43	1fir_A_G44_G45	AAA	AA08	34	0.35	AA08
44	1fir_A_G45_7MG46	NAN	NANT	0	1.17	AA07
45	1fir_A_7MG46_H2U47	NAN	NANT	0	0.81	OP13
46	1fir_A_H2U47_5MC48	NAN	NANT	0	1.32	OP17
47	1fir_A_5MC48_5MC49	NAN	NANT	0	1.38	OP05
48	1fir_A_5MC49_A50	NAN	NANT	0	0.39	AA04
49	1fir_A_A50_G51	AAA	AA00	73	0.18	AA00
50	1fir_A_G51_G52	AAA	AA00	39	0.24	AA00
51	1fir_A_G52_G53	AAA	AA00	56	0.28	AA00
52	1fir_A_G53_2MU54	AAA	AA00	91	0.12	AA00
53	1fir_A_C56_A57	AAA	AA00	44	0.43	AA00
54	1fir_A_A57_1MA58	ICL	IC01	47	0.30	IC01
55	1fir_A_1MA58_G59	OPN	OP25	82	0.17	OP25
56	1fir_A_G59_U60	NAN	NANT	0	0.64	AA03
57	1fir_A_U60_C61	NAN	NANT	0	1.90	OP15
58	1fir_A_C61_C62	AAA	AA00	22	0.36	AA00
59	1fir_A_C62_C63	AAA	AA00	77	0.15	AA00
60	1fir_A_C63_U64	AAA	AA00	79	0.20	AA00
61	1fir_A_U64_G65	AAA	AA00	76	0.18	AA00
62	1fir_A_G65_U66	AAA	AA00	15	0.28	AA00
63	1fir_A_U66_U67	AAA	AA08	57	0.30	AA08
64	1fir_A_U67_C68	AAA	AA08	51	0.36	AA08
65	1fir_A_C68_G69	AAA	AA08	84	0.14	AA08
66	1fir_A_G69_G70	AAA	AA00	82	0.13	AA00
67	1fir_A_G70_G71	AAA	AA00	79	0.20	AA00
68	1fir_A_G71_C72	AAA	AA00	66	0.27	AA00
69	1fir_A_C72_G73	AAA	AA08	83	0.29	AA08
70	1fir_A_G73_C74	AAA	AA00	21	0.36	AA00
71	1fir_A_C74_C75	NAN	NANT	0	1.87	OP01
72	1fir_A_C75_A76	NAN	NANT	0	0.62	AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible