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Conformers: ABBIImiBZICOPNSYNN
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NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37

Results of the assignment of 176 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011feq-m10_A_G27_C28AAAAA00780.32 AA00
0021feq-m11_A_G27_C28AAwAA01480.39 AA01
0031feq-m1_A_G27_C28AAwAA01780.31 AA01
0041feq-m2_A_G27_C28AAwAA01330.38 AA01
0051feq-m3_A_G27_C28AAwAA01590.35 AA01
0061feq-m4_A_G27_C28AAwAA01410.47 AA01
0071feq-m5_A_G27_C28AAAAA00680.28 AA00
0081feq-m6_A_G27_C28AAwAA01380.35 AA01
0091feq-m7_A_G27_C28AAwAA01390.41 AA01
0101feq-m8_A_G27_C28AAwAA01500.45 AA01
0111feq-m9_A_G27_C28AAwAA01450.39 AA01
0121feq-m10_A_C28_A29AAAAA00220.40 AA00
0131feq-m11_A_C28_A29AAAAA04540.48 AA04
0141feq-m1_A_C28_A29AAAAA00330.38 AA00
0151feq-m2_A_C28_A29AAAAA04510.46 AA04
0161feq-m3_A_C28_A29AAAAA00320.38 AA00
0171feq-m4_A_C28_A29AAwAA01340.34 AA01
0181feq-m5_A_C28_A29AAAAA04400.50 AA04
0191feq-m6_A_C28_A29AAwAA01230.44 AA01
0201feq-m7_A_C28_A29AAAAA04380.51 AA04
0211feq-m8_A_C28_A29AAAAA00120.41 AA00
0221feq-m9_A_C28_A29AAwAA01290.37 AA01
0231feq-m10_A_A29_G30AAAAA04500.50 AA04
0241feq-m11_A_A29_G30AAwAA01120.44 AA01
0251feq-m1_A_A29_G30AAwAA01430.41 AA01
0261feq-m2_A_A29_G30NANNANT00.57 AA10
0271feq-m3_A_A29_G30AAwAA01200.45 AA01
0281feq-m4_A_A29_G30AAwAA01230.38 AA01
0291feq-m5_A_A29_G30NANNANT00.48 AA01
0301feq-m6_A_A29_G30AAwAA01170.39 AA01
0311feq-m7_A_A29_G30AAwAA01160.48 AA01
0321feq-m8_A_A29_G30AAAAA04450.55 AA04
0331feq-m9_A_A29_G30AAwAA01260.40 AA01
0341feq-m10_A_G30_A31NANNANT00.76 AA08
0351feq-m11_A_G30_A31NANNANT00.86 AA06
0361feq-m1_A_G30_A31NANNANT00.74 AA03
0371feq-m2_A_G30_A31NANNANT00.50 AA05
0381feq-m3_A_G30_A31NANNANT00.81 AA03
0391feq-m4_A_G30_A31NANNANT00.83 AA03
0401feq-m5_A_G30_A31NANNANT00.84 AA03
0411feq-m6_A_G30_A31NANNANT00.86 AA06
0421feq-m7_A_G30_A31NANNANT00.81 AA06
0431feq-m8_A_G30_A31NANNANT00.49 AA05
0441feq-m9_A_G30_A31NANNANT00.79 AA03
0451feq-m10_A_A31_C32AAAAA00180.62 AA00
0461feq-m11_A_A31_C32AAAAA00120.66 AA00
0471feq-m1_A_A31_C32AAAAA00150.61 AA00
0481feq-m2_A_A31_C32NANNANT00.95 AA05
0491feq-m3_A_A31_C32AAAAA0070.61 AA00
0501feq-m4_A_A31_C32AAAAA04210.61 AA04
0511feq-m5_A_A31_C32AAAAA00120.54 AA00
0521feq-m6_A_A31_C32AAAAA00130.64 AA00
0531feq-m7_A_A31_C32NANNANT00.92 AA06
0541feq-m8_A_A31_C32NANNANT01.09 AA05
0551feq-m9_A_A31_C32AAAAA00110.68 AA00
0561feq-m10_A_C32_U33NANNANT01.26 OP28
0571feq-m11_A_C32_U33NANNANT01.39 OP28
0581feq-m1_A_C32_U33A-BAB04210.43 AB04
0591feq-m2_A_C32_U33A-BAB04490.30 AB04
0601feq-m3_A_C32_U33A-BAB01120.32 AB01
0611feq-m4_A_C32_U33A-BAB01100.35 AB01
0621feq-m5_A_C32_U33NANNANT00.53 AA01
0631feq-m6_A_C32_U33NANNANT01.80 IC02
0641feq-m7_A_C32_U33NANNANT01.40 OP22
0651feq-m8_A_C32_U33NANNANT00.94 OP19
0661feq-m9_A_C32_U33NANNANT02.01 OP16
0671feq-m10_A_U33_U34NANNANT01.18 AB04
0681feq-m11_A_U33_U34NANNANT00.72 BB16
0691feq-m1_A_U33_U34NANNANT00.48 BB20
0701feq-m2_A_U33_U34NANNANT00.80 BB20
0711feq-m3_A_U33_U34NANNANT00.50 BB20
0721feq-m4_A_U33_U34NANNANT00.37 BB20
0731feq-m5_A_U33_U34NANNANT01.28 OP18
0741feq-m6_A_U33_U34NANNANT01.14 IC04
0751feq-m7_A_U33_U34NANNANT01.83 ZZ2S
0761feq-m8_A_U33_U34NANNANT00.92 ZZ01
0771feq-m9_A_U33_U34NANNANT01.15 AB1S
0781feq-m10_A_U34_U35NANNANT00.57 OP11
0791feq-m11_A_U34_U35NANNANT00.60 OP11
0801feq-m1_A_U34_U35NANNANT01.13 OP17
0811feq-m2_A_U34_U35NANNANT01.62 OP1S
0821feq-m3_A_U34_U35NANNANT00.81 OP17
0831feq-m4_A_U34_U35NANNANT00.76 OP17
0841feq-m5_A_U34_U35NANNANT01.99 OP21
0851feq-m6_A_U34_U35NANNANT00.42 OP17
0861feq-m7_A_U34_U35NANNANT00.98 OPS1
0871feq-m8_A_U34_U35NANNANT00.61 OP17
0881feq-m9_A_U34_U35NANNANT01.46 IC01
0891feq-m10_A_U35_U36NANNANT01.24 IC04
0901feq-m11_A_U35_U36NANNANT00.88 ZZS1
0911feq-m1_A_U35_U36NANNANT01.44 IC03
0921feq-m2_A_U35_U36NANNANT00.89 ZZS1
0931feq-m3_A_U35_U36NANNANT00.85 ZZS1
0941feq-m4_A_U35_U36NANNANT00.85 ZZS1
0951feq-m5_A_U35_U36NANNANT01.52 AA05
0961feq-m6_A_U35_U36NANNANT01.37 AA11
0971feq-m7_A_U35_U36NANNANT01.22 IC04
0981feq-m8_A_U35_U36NANNANT00.78 AB04
0991feq-m9_A_U35_U36NANNANT00.57 OPS1
1001feq-m10_A_U36_T6A37NANNANT01.49 AA05
1011feq-m11_A_U36_T6A37NANNANT01.40 AA11
1021feq-m1_A_U36_T6A37NANNANT01.70 OP27
1031feq-m2_A_U36_T6A37OPNOP12420.29 OP12
1041feq-m3_A_U36_T6A37OPNOP12450.55 OP12
1051feq-m4_A_U36_T6A37NANNANT01.42 OP27
1061feq-m5_A_U36_T6A37NANNANT00.74 OP27
1071feq-m6_A_U36_T6A37OPNOP12330.48 OP12
1081feq-m7_A_U36_T6A37NANNANT01.42 AA05
1091feq-m8_A_U36_T6A37OPNOP12480.31 OP12
1101feq-m9_A_U36_T6A37NANNANT01.33 AA11
1111feq-m10_A_T6A37_A38AAwAA05180.31 AA05
1121feq-m11_A_T6A37_A38AAwAA05150.32 AA05
1131feq-m1_A_T6A37_A38NANNANT00.82 AA00
1141feq-m2_A_T6A37_A38NANNANT00.77 AA00
1151feq-m3_A_T6A37_A38AAwAA05160.33 AA05
1161feq-m4_A_T6A37_A38NANNANT00.80 AA00
1171feq-m5_A_T6A37_A38NANNANT00.83 AA04
1181feq-m6_A_T6A37_A38NANNANT00.77 AA00
1191feq-m7_A_T6A37_A38NANNANT00.34 AA05
1201feq-m8_A_T6A37_A38AAwAA05260.26 AA05
1211feq-m9_A_T6A37_A38AAwAA05160.32 AA05
1221feq-m10_A_A38_U39AAAAA00360.50 AA00
1231feq-m11_A_A38_U39AAAAA00310.53 AA00
1241feq-m1_A_A38_U39AAAAA00480.41 AA00
1251feq-m2_A_A38_U39AAAAA00340.50 AA00
1261feq-m3_A_A38_U39AAAAA00280.52 AA00
1271feq-m4_A_A38_U39AAAAA00450.41 AA00
1281feq-m5_A_A38_U39AAwAA01210.35 AA01
1291feq-m6_A_A38_U39AAAAA00500.38 AA00
1301feq-m7_A_A38_U39AAAAA00340.49 AA00
1311feq-m8_A_A38_U39AAAAA00540.44 AA00
1321feq-m9_A_A38_U39AAAAA00370.44 AA00
1331feq-m10_A_U39_C40AAwAA01620.37 AA01
1341feq-m11_A_U39_C40AAwAA01590.36 AA01
1351feq-m1_A_U39_C40AAwAA01810.32 AA01
1361feq-m2_A_U39_C40AAwAA01620.39 AA01
1371feq-m3_A_U39_C40AAwAA01580.42 AA01
1381feq-m4_A_U39_C40AAwAA01650.38 AA01
1391feq-m5_A_U39_C40NANNANT00.48 AA01
1401feq-m6_A_U39_C40AAwAA01630.31 AA01
1411feq-m7_A_U39_C40AAwAA01610.25 AA01
1421feq-m8_A_U39_C40AAwAA01670.36 AA01
1431feq-m9_A_U39_C40AAAAA00690.23 AA00
1441feq-m10_A_C40_U41AAAAA00590.29 AA00
1451feq-m11_A_C40_U41AAAAA00450.30 AA00
1461feq-m1_A_C40_U41AAAAA00710.24 AA00
1471feq-m2_A_C40_U41AAAAA00480.28 AA00
1481feq-m3_A_C40_U41AAAAA00580.30 AA00
1491feq-m4_A_C40_U41AAAAA00460.33 AA00
1501feq-m5_A_C40_U41AAAAA00350.32 AA00
1511feq-m6_A_C40_U41AAAAA00390.30 AA00
1521feq-m7_A_C40_U41AAAAA00260.29 AA00
1531feq-m8_A_C40_U41AAAAA00590.29 AA00
1541feq-m9_A_C40_U41AAAAA00440.33 AA00
1551feq-m10_A_U41_G42NANNANT00.77 AA04
1561feq-m11_A_U41_G42NANNANT00.63 AA01
1571feq-m1_A_U41_G42AAwAA01410.53 AA01
1581feq-m2_A_U41_G42NANNANT00.87 AA06
1591feq-m3_A_U41_G42NANNANT00.72 AA04
1601feq-m4_A_U41_G42AAAAA04430.69 AA04
1611feq-m5_A_U41_G42NANNANT00.93 AA06
1621feq-m6_A_U41_G42NANNANT00.65 AA01
1631feq-m7_A_U41_G42NANNANT01.00 AA06
1641feq-m8_A_U41_G42NANNANT00.77 AA04
1651feq-m9_A_U41_G42NANNANT00.75 AA04
1661feq-m10_A_G42_C43AAAAA00620.28 AA00
1671feq-m11_A_G42_C43AAAAA00660.26 AA00
1681feq-m1_A_G42_C43AAAAA00790.27 AA00
1691feq-m2_A_G42_C43AAAAA00680.28 AA00
1701feq-m3_A_G42_C43AAAAA00590.26 AA00
1711feq-m4_A_G42_C43AAAAA00510.26 AA00
1721feq-m5_A_G42_C43AAAAA00610.27 AA00
1731feq-m6_A_G42_C43AAAAA00560.29 AA00
1741feq-m7_A_G42_C43AAwAA01160.49 AA01
1751feq-m8_A_G42_C43AAAAA00540.32 AA00
1761feq-m9_A_G42_C43AAAAA00440.35 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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