Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution Structure of a 22-Nucleotide Hairpin Similar to the P5ABC Region of a Group I Ribozyme with Cobalt(III)hexammine Complexed to the GAAA Tetraloop
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1f9l_A_G1_G2 | NAN | NANT | 0 | 0.51 |
| 02 | 1f9l_A_G2_C3 | AAA | AA04 | 74 | 0.32 |
| 03 | 1f9l_A_C3_G4 | AAu | AA12 | 14 | 0.33 |
| 04 | 1f9l_A_G4_A5 | NAN | NANT | 0 | 0.56 |
| 05 | 1f9l_A_A5_A6 | NAN | NANT | 0 | 0.46 |
| 06 | 1f9l_A_A6_G7 | AAA | AA08 | 69 | 0.18 |
| 07 | 1f9l_A_G7_U8 | AAu | AA12 | 16 | 0.60 |
| 08 | 1f9l_A_U8_C9 | AAA | AA04 | 62 | 0.28 |
| 09 | 1f9l_A_C9_G10 | AAA | AA04 | 48 | 0.46 |
| 10 | 1f9l_A_G10_A11 | OPN | OP04 | 14 | 0.27 |
| 11 | 1f9l_A_A11_A12 | AAw | AA01 | 59 | 0.17 |
| 12 | 1f9l_A_A12_A13 | AAw | AA06 | 43 | 0.65 |
| 13 | 1f9l_A_A13_G14 | NAN | NANT | 0 | 1.09 |
| 14 | 1f9l_A_G14_A15 | AAA | AA00 | 66 | 0.28 |
| 15 | 1f9l_A_A15_U16 | NAN | NANT | 0 | 0.29 |
| 16 | 1f9l_A_U16_G17 | AAu | AA07 | 17 | 0.52 |
| 17 | 1f9l_A_G17_G18 | AAw | AA01 | 58 | 0.18 |
| 18 | 1f9l_A_G18_C19 | AAA | AA00 | 23 | 0.41 |
| 19 | 1f9l_A_C19_G20 | AAA | AA04 | 49 | 0.61 |
| 20 | 1f9l_A_G20_C21 | AAu | AA12 | 31 | 0.60 |
| 21 | 1f9l_A_C21_C22 | AAA | AA08 | 15 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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