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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011f7u_B_U902_C903AAAAA00950.12 AA00
021f7u_B_C903_C904AAAAA00910.15 AA00
031f7u_B_C904_U905AAAAA00910.20 AA00
041f7u_B_U905_C906AAAAA00890.15 AA00
051f7u_B_C906_G907A-BAB05920.20 AB05
061f7u_B_G907_U908OPNOP11970.16 OP11
071f7u_B_U908_1MG909NANNANT01.04 IC02
081f7u_B_1MG909_2MG910NANNANT01.28 OP26
091f7u_B_2MG910_C911AAAAA08170.38 AA08
101f7u_B_C911_C912AAAAA00710.22 AA00
111f7u_B_C912_C913AAAAA00670.32 AA00
121f7u_B_C913_A914AAuAA12800.23 AA12
131f7u_B_A914_A915A-BAB05920.25 AB05
141f7u_B_A915_H2U916NANNANT01.32 OP17
151f7u_B_H2U916_G917NANNANT01.31 OP17
161f7u_B_G917_G918NANNANT00.56 IC06
171f7u_B_G918_H2U919NANNANT00.74 IC05
181f7u_B_H2U919_C920NANNANT01.59 OP17
191f7u_B_C920_A921NANNANT00.36 OP02
201f7u_B_A921_C922AAuAA13370.35 AA13
211f7u_B_C922_G923AAwAA01730.21 AA01
221f7u_B_G923_G924AAAAA00730.17 AA00
231f7u_B_G924_C925AAAAA00760.26 AA00
241f7u_B_C925_M2G926AAAAA00770.31 AA00
251f7u_B_C928_U929AAAAA00710.26 AA00
261f7u_B_U929_G930AAwAA01970.20 AA01
271f7u_B_G930_G931AAAAA00580.21 AA00
281f7u_B_G931_C932NANNANT00.69 IC07
291f7u_B_C932_U933NANNANT00.79 OP30
301f7u_B_C935_G936NANNANT00.61 OP05
311f7u_B_G936_A937NANNANT01.09 OP13
321f7u_B_A937_A938NANNANT00.85 OP21
331f7u_B_A938_C939OPNOP11750.32 OP11
341f7u_B_C939_C940AAAAA00840.20 AA00
351f7u_B_C940_A941AAAAA00790.19 AA00
361f7u_B_A941_G942AAAAA00890.24 AA00
371f7u_B_G942_A943AAAAA00880.29 AA00
381f7u_B_A943_A944AAAAA00540.29 AA00
391f7u_B_A944_G945AAAAA00820.14 AA00
401f7u_B_G945_A946ICLIC01750.22 IC01
411f7u_B_A946_H2U947NANNANT00.82 OP14
421f7u_B_H2U947_U948NANNANT00.66 OP17
431f7u_B_U948_5MC949NANNANT01.39 OP05
441f7u_B_5MC949_C950AAAAA00790.22 AA00
451f7u_B_C950_A951AAAAA00660.20 AA00
461f7u_B_A951_G952AAwAA01860.22 AA01
471f7u_B_G952_G953AAAAA00640.29 AA00
481f7u_B_G953_5MU954AAAAA00510.28 AA00
491f7u_B_C956_A957AAAAA00790.32 AA00
501f7u_B_A957_1MA958ICLIC01910.34 IC01
511f7u_B_1MA958_G959OPNOP25890.17 OP25
521f7u_B_G959_U960A-BAB05730.34 AB05
531f7u_B_U960_C961OPNOP12960.00 OP12
541f7u_B_C961_C962AAAAA00540.29 AA00
551f7u_B_C962_U963AAAAA00820.16 AA00
561f7u_B_U963_G964AAAAA00870.16 AA00
571f7u_B_G964_G965AAAAA00910.19 AA00
581f7u_B_G965_C966AAAAA00860.16 AA00
591f7u_B_C966_G967AAAAA00910.13 AA00
601f7u_B_G967_G968AAAAA00700.23 AA00
611f7u_B_G968_G969AAAAA00810.21 AA00
621f7u_B_G969_G970AAAAA00920.17 AA00
631f7u_B_G970_A971AAAAA00940.17 AA00
641f7u_B_A971_A972AAAAA00930.16 AA00
651f7u_B_A972_G973NANNANT00.95 OP02
661f7u_B_G973_C974NANNANT01.31 AA11
671f7u_B_C974_C975NANNANT01.22 OP31
681f7u_B_C975_A976AAAAA00400.35 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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