Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES

Results of the assignment of 312 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011f7i-m10_A_G1_G2NANNANT00.50 AA04
0021f7i-m11_A_G1_G2NANNANT00.50 AA02
0031f7i-m12_A_G1_G2NANNANT00.55 AA04
0041f7i-m1_A_G1_G2NANNANT00.93 BA05
0051f7i-m2_A_G1_G2AAAAA00210.37 AA00
0061f7i-m3_A_G1_G2NANNANT00.51 AA02
0071f7i-m4_A_G1_G2NANNANT00.50 AA02
0081f7i-m5_A_G1_G2NANNANT00.53 AA02
0091f7i-m6_A_G1_G2NANNANT00.52 AA02
0101f7i-m7_A_G1_G2NANNANT00.90 BA05
0111f7i-m8_A_G1_G2NANNANT00.49 AA02
0121f7i-m9_A_G1_G2AAAAA04330.45 AA04
0131f7i-m10_A_G2_A3AAAAA08570.23 AA08
0141f7i-m11_A_G2_A3AAAAA00590.25 AA00
0151f7i-m12_A_G2_A3AAAAA00270.35 AA00
0161f7i-m1_A_G2_A3AAAAA00590.27 AA00
0171f7i-m2_A_G2_A3AAAAA04690.23 AA04
0181f7i-m3_A_G2_A3AAAAA00390.31 AA00
0191f7i-m4_A_G2_A3AAAAA00360.36 AA00
0201f7i-m5_A_G2_A3AAAAA00200.32 AA00
0211f7i-m6_A_G2_A3AAAAA00280.27 AA00
0221f7i-m7_A_G2_A3AAAAA00330.34 AA00
0231f7i-m8_A_G2_A3AAAAA00390.38 AA00
0241f7i-m9_A_G2_A3AAAAA00390.24 AA00
0251f7i-m10_A_A3_A4AAAAA00240.35 AA00
0261f7i-m11_A_A3_A4AAAAA00590.25 AA00
0271f7i-m12_A_A3_A4AAAAA00450.33 AA00
0281f7i-m1_A_A3_A4AAAAA00590.25 AA00
0291f7i-m2_A_A3_A4AAAAA00230.36 AA00
0301f7i-m3_A_A3_A4AAAAA00480.28 AA00
0311f7i-m4_A_A3_A4AAAAA00590.28 AA00
0321f7i-m5_A_A3_A4AAAAA00510.33 AA00
0331f7i-m6_A_A3_A4AAAAA00310.40 AA00
0341f7i-m7_A_A3_A4AAAAA00370.28 AA00
0351f7i-m8_A_A3_A4AAAAA00250.34 AA00
0361f7i-m9_A_A3_A4AAAAA00590.31 AA00
0371f7i-m10_A_A4_G5AAAAA00580.32 AA00
0381f7i-m11_A_A4_G5AAAAA00550.38 AA00
0391f7i-m12_A_A4_G5AAAAA00370.42 AA00
0401f7i-m1_A_A4_G5AAAAA00320.38 AA00
0411f7i-m2_A_A4_G5AAAAA00380.33 AA00
0421f7i-m3_A_A4_G5AAAAA00370.38 AA00
0431f7i-m4_A_A4_G5AAAAA00310.35 AA00
0441f7i-m5_A_A4_G5AAAAA00490.43 AA00
0451f7i-m6_A_A4_G5AAAAA00530.37 AA00
0461f7i-m7_A_A4_G5AAAAA00330.30 AA00
0471f7i-m8_A_A4_G5AAAAA00460.38 AA00
0481f7i-m9_A_A4_G5AAAAA00390.39 AA00
0491f7i-m10_A_G5_U6AAAAA00350.51 AA00
0501f7i-m11_A_G5_U6AAAAA00330.51 AA00
0511f7i-m12_A_G5_U6NANNANT00.57 AA04
0521f7i-m1_A_G5_U6NANNANT00.54 AA04
0531f7i-m2_A_G5_U6NANNANT00.56 AA04
0541f7i-m3_A_G5_U6AAAAA04350.54 AA04
0551f7i-m4_A_G5_U6NANNANT00.59 AA00
0561f7i-m5_A_G5_U6NANNANT00.59 AA04
0571f7i-m6_A_G5_U6AAAAA04440.52 AA04
0581f7i-m7_A_G5_U6AAAAA04260.55 AA04
0591f7i-m8_A_G5_U6AAAAA00340.56 AA00
0601f7i-m9_A_G5_U6NANNANT00.59 AA00
0611f7i-m10_A_U6_U7NANNANT01.44 AA11
0621f7i-m11_A_U6_U7NANNANT01.31 AA10
0631f7i-m12_A_U6_U7NANNANT01.48 AA11
0641f7i-m1_A_U6_U7NANNANT01.43 AA11
0651f7i-m2_A_U6_U7NANNANT01.47 AA11
0661f7i-m3_A_U6_U7NANNANT01.29 AB2S
0671f7i-m4_A_U6_U7NANNANT01.46 AA11
0681f7i-m5_A_U6_U7NANNANT01.35 AA10
0691f7i-m6_A_U6_U7NANNANT01.57 AA10
0701f7i-m7_A_U6_U7NANNANT01.55 AA10
0711f7i-m8_A_U6_U7NANNANT01.16 AA05
0721f7i-m9_A_U6_U7NANNANT01.38 AA11
0731f7i-m10_A_U7_C8NANNANT01.59 ZZS1
0741f7i-m11_A_U7_C8NANNANT01.40 AB02
0751f7i-m12_A_U7_C8NANNANT00.93 OP07
0761f7i-m1_A_U7_C8NANNANT01.60 ZZS1
0771f7i-m2_A_U7_C8NANNANT01.03 OP07
0781f7i-m3_A_U7_C8NANNANT01.60 ZZS1
0791f7i-m4_A_U7_C8NANNANT00.95 OP07
0801f7i-m5_A_U7_C8NANNANT01.24 OP07
0811f7i-m6_A_U7_C8NANNANT00.90 OP15
0821f7i-m7_A_U7_C8NANNANT00.91 OP15
0831f7i-m8_A_U7_C8NANNANT00.97 OP15
0841f7i-m9_A_U7_C8NANNANT01.05 OP07
0851f7i-m10_A_C8_G9AAAAA04580.32 AA04
0861f7i-m11_A_C8_G9NANNANT00.36 AA02
0871f7i-m12_A_C8_G9AAAAA00210.30 AA00
0881f7i-m1_A_C8_G9AAAAA00140.38 AA00
0891f7i-m2_A_C8_G9AAAAA04830.18 AA04
0901f7i-m3_A_C8_G9AAAAA04580.27 AA04
0911f7i-m4_A_C8_G9AAAAA00220.28 AA00
0921f7i-m5_A_C8_G9AAAAA00360.28 AA00
0931f7i-m6_A_C8_G9AAAAA00220.39 AA00
0941f7i-m7_A_C8_G9AAAAA08450.40 AA08
0951f7i-m8_A_C8_G9AAAAA04650.36 AA04
0961f7i-m9_A_C8_G9AAAAA00530.22 AA00
0971f7i-m10_A_G9_G10AAAAA04600.30 AA04
0981f7i-m11_A_G9_G10AAAAA04660.24 AA04
0991f7i-m12_A_G9_G10NANNANT00.22 AA04
1001f7i-m1_A_G9_G10AAAAA04620.24 AA04
1011f7i-m2_A_G9_G10AAAAA04830.21 AA04
1021f7i-m3_A_G9_G10AAAAA04750.25 AA04
1031f7i-m4_A_G9_G10AAAAA04740.22 AA04
1041f7i-m5_A_G9_G10AAAAA04590.26 AA04
1051f7i-m6_A_G9_G10AAAAA00500.24 AA00
1061f7i-m7_A_G9_G10AAAAA08200.30 AA08
1071f7i-m8_A_G9_G10AAAAA04790.23 AA04
1081f7i-m9_A_G9_G10AAAAA04460.23 AA04
1091f7i-m10_A_G10_U11AAAAA00460.34 AA00
1101f7i-m11_A_G10_U11AAAAA04840.25 AA04
1111f7i-m12_A_G10_U11AAAAA04720.21 AA04
1121f7i-m1_A_G10_U11AAAAA04870.19 AA04
1131f7i-m2_A_G10_U11AAAAA04680.33 AA04
1141f7i-m3_A_G10_U11AAAAA04750.26 AA04
1151f7i-m4_A_G10_U11AAAAA04840.28 AA04
1161f7i-m5_A_G10_U11AAAAA04870.17 AA04
1171f7i-m6_A_G10_U11AAAAA04760.26 AA04
1181f7i-m7_A_G10_U11AAAAA04620.28 AA04
1191f7i-m8_A_G10_U11AAAAA04800.26 AA04
1201f7i-m9_A_G10_U11AAAAA04670.21 AA04
1211f7i-m10_A_U11_C12AAAAA08460.36 AA08
1221f7i-m11_A_U11_C12AAAAA08430.34 AA08
1231f7i-m12_A_U11_C12AAAAA08100.39 AA08
1241f7i-m1_A_U11_C12AAAAA08560.26 AA08
1251f7i-m2_A_U11_C12AAAAA08450.33 AA08
1261f7i-m3_A_U11_C12AAAAA08450.32 AA08
1271f7i-m4_A_U11_C12AAAAA08470.41 AA08
1281f7i-m5_A_U11_C12AAAAA08230.41 AA08
1291f7i-m6_A_U11_C12AAAAA08510.30 AA08
1301f7i-m7_A_U11_C12AAAAA08400.30 AA08
1311f7i-m8_A_U11_C12AAAAA08320.41 AA08
1321f7i-m9_A_U11_C12AAAAA08250.40 AA08
1331f7i-m10_A_C12_U13AAAAA04410.54 AA04
1341f7i-m11_A_C12_U13AAAAA04230.63 AA04
1351f7i-m12_A_C12_U13AAAAA08110.43 AA08
1361f7i-m1_A_C12_U13NANNANT00.79 AA04
1371f7i-m2_A_C12_U13AAAAA04240.62 AA04
1381f7i-m3_A_C12_U13AAAAA04300.61 AA04
1391f7i-m4_A_C12_U13AAAAA04360.58 AA04
1401f7i-m5_A_C12_U13AAAAA04510.53 AA04
1411f7i-m6_A_C12_U13AAAAA04280.59 AA04
1421f7i-m7_A_C12_U13AAAAA04560.49 AA04
1431f7i-m8_A_C12_U13AAAAA08120.38 AA08
1441f7i-m9_A_C12_U13AAAAA08110.34 AA08
1451f7i-m10_A_U13_U14NANNANT02.00 OP11
1461f7i-m11_A_U13_U14NANNANT00.73 OP09
1471f7i-m12_A_U13_U14NANNANT00.88 OP09
1481f7i-m1_A_U13_U14NANNANT02.37 OP17
1491f7i-m2_A_U13_U14NANNANT00.72 OP09
1501f7i-m3_A_U13_U14NANNANT00.74 OP09
1511f7i-m4_A_U13_U14NANNANT00.69 OP09
1521f7i-m5_A_U13_U14NANNANT00.77 OP09
1531f7i-m6_A_U13_U14NANNANT00.70 OP09
1541f7i-m7_A_U13_U14NANNANT00.62 OP09
1551f7i-m8_A_U13_U14NANNANT00.81 OP09
1561f7i-m9_A_U13_U14NANNANT00.93 OP09
1571f7i-m10_A_U14_C15NANNANT00.88 ZZ01
1581f7i-m11_A_U14_C15NANNANT01.15 OP12
1591f7i-m12_A_U14_C15NANNANT01.11 OP12
1601f7i-m1_A_U14_C15NANNANT01.05 OP12
1611f7i-m2_A_U14_C15NANNANT01.09 OP12
1621f7i-m3_A_U14_C15NANNANT01.50 IC04
1631f7i-m4_A_U14_C15NANNANT01.12 OP12
1641f7i-m5_A_U14_C15NANNANT01.17 OP12
1651f7i-m6_A_U14_C15NANNANT01.13 OP12
1661f7i-m7_A_U14_C15NANNANT00.74 OP20
1671f7i-m8_A_U14_C15NANNANT01.11 OP12
1681f7i-m9_A_U14_C15NANNANT01.43 IC04
1691f7i-m10_A_C15_G16NANNANT00.90 BB13
1701f7i-m11_A_C15_G16NANNANT01.85 OP23
1711f7i-m12_A_C15_G16NANNANT01.93 BB1S
1721f7i-m1_A_C15_G16NANNANT00.63 ZZ1S
1731f7i-m2_A_C15_G16NANNANT01.80 OP23
1741f7i-m3_A_C15_G16NANNANT01.79 OP23
1751f7i-m4_A_C15_G16NANNANT00.79 ZZ02
1761f7i-m5_A_C15_G16NANNANT01.89 OP23
1771f7i-m6_A_C15_G16NANNANT00.80 ZZ02
1781f7i-m7_A_C15_G16NANNANT00.80 ZZ1S
1791f7i-m8_A_C15_G16NANNANT01.95 OP23
1801f7i-m9_A_C15_G16NANNANT01.81 BB1S
1811f7i-m10_A_G16_G17NANNANT00.59 AAS1
1821f7i-m11_A_G16_G17NANNANT00.63 AAS1
1831f7i-m12_A_G16_G17NANNANT01.15 AAS1
1841f7i-m1_A_G16_G17NANNANT00.55 AAS1
1851f7i-m2_A_G16_G17NANNANT00.62 AAS1
1861f7i-m3_A_G16_G17NANNANT00.57 AAS1
1871f7i-m4_A_G16_G17NANNANT00.63 AAS1
1881f7i-m5_A_G16_G17NANNANT00.69 AAS1
1891f7i-m6_A_G16_G17NANNANT00.60 AAS1
1901f7i-m7_A_G16_G17NANNANT00.64 AAS1
1911f7i-m8_A_G16_G17NANNANT00.73 AAS1
1921f7i-m9_A_G16_G17NANNANT01.21 AAS1
1931f7i-m10_A_G17_A18AAAAA04560.35 AA04
1941f7i-m11_A_G17_A18AAAAA0080.30 AA00
1951f7i-m12_A_G17_A18AAAAA08660.21 AA08
1961f7i-m1_A_G17_A18AAAAA04630.29 AA04
1971f7i-m2_A_G17_A18AAAAA00160.31 AA00
1981f7i-m3_A_G17_A18AAAAA04700.23 AA04
1991f7i-m4_A_G17_A18AAAAA02400.39 AA02
2001f7i-m5_A_G17_A18AAAAA08670.28 AA08
2011f7i-m6_A_G17_A18AAAAA00380.29 AA00
2021f7i-m7_A_G17_A18AAAAA00550.28 AA00
2031f7i-m8_A_G17_A18AAAAA04560.40 AA04
2041f7i-m9_A_G17_A18AAAAA00470.38 AA00
2051f7i-m10_A_A18_C19AAAAA08690.28 AA08
2061f7i-m11_A_A18_C19AAAAA00420.25 AA00
2071f7i-m12_A_A18_C19AAAAA00690.23 AA00
2081f7i-m1_A_A18_C19AAAAA00750.23 AA00
2091f7i-m2_A_A18_C19AAAAA00360.31 AA00
2101f7i-m3_A_A18_C19AAAAA00670.21 AA00
2111f7i-m4_A_A18_C19AAAAA04570.26 AA04
2121f7i-m5_A_A18_C19AAAAA00690.28 AA00
2131f7i-m6_A_A18_C19AAAAA04650.22 AA04
2141f7i-m7_A_A18_C19AAAAA04840.15 AA04
2151f7i-m8_A_A18_C19AAAAA08780.16 AA08
2161f7i-m9_A_A18_C19AAAAA00570.29 AA00
2171f7i-m10_A_C19_C20AAAAA08170.45 AA08
2181f7i-m11_A_C19_C20AAAAA08350.38 AA08
2191f7i-m12_A_C19_C20AAuAA12270.50 AA12
2201f7i-m1_A_C19_C20AAuAA12220.53 AA12
2211f7i-m2_A_C19_C20AAuAA12190.56 AA12
2221f7i-m3_A_C19_C20AAuAA12220.52 AA12
2231f7i-m4_A_C19_C20AAuAA12210.55 AA12
2241f7i-m5_A_C19_C20AAAAA08300.40 AA08
2251f7i-m6_A_C19_C20NANNANT00.56 AA12
2261f7i-m7_A_C19_C20AAAAA0890.49 AA08
2271f7i-m8_A_C19_C20AAAAA08190.38 AA08
2281f7i-m9_A_C19_C20AAuAA12290.47 AA12
2291f7i-m10_A_C20_G21AAAAA00380.31 AA00
2301f7i-m11_A_C20_G21AAAAA08630.27 AA08
2311f7i-m12_A_C20_G21AAAAA04740.26 AA04
2321f7i-m1_A_C20_G21AAAAA04790.21 AA04
2331f7i-m2_A_C20_G21AAAAA00390.27 AA00
2341f7i-m3_A_C20_G21AAAAA04640.31 AA04
2351f7i-m4_A_C20_G21AAAAA00220.27 AA00
2361f7i-m5_A_C20_G21NANNANT00.51 AA00
2371f7i-m6_A_C20_G21AAAAA00500.29 AA00
2381f7i-m7_A_C20_G21AAAAA00140.37 AA00
2391f7i-m8_A_C20_G21NANNANT00.58 AB04
2401f7i-m9_A_C20_G21AAAAA03370.28 AA03
2411f7i-m10_A_G21_G22AAuAA12260.48 AA12
2421f7i-m11_A_G21_G22AAuAA12240.54 AA12
2431f7i-m12_A_G21_G22AAAAA08230.47 AA08
2441f7i-m1_A_G21_G22AAAAA08130.54 AA08
2451f7i-m2_A_G21_G22AAuAA12300.42 AA12
2461f7i-m3_A_G21_G22AAuAA12270.47 AA12
2471f7i-m4_A_G21_G22AAuAA12300.47 AA12
2481f7i-m5_A_G21_G22AAuAA12270.41 AA12
2491f7i-m6_A_G21_G22AAuAA12250.48 AA12
2501f7i-m7_A_G21_G22AAuAA12260.50 AA12
2511f7i-m8_A_G21_G22AAuAA12220.33 AA12
2521f7i-m9_A_G21_G22NANNANT00.39 AA12
2531f7i-m10_A_G22_C23AAAAA00720.20 AA00
2541f7i-m11_A_G22_C23AAAAA04740.20 AA04
2551f7i-m12_A_G22_C23AAAAA08610.20 AA08
2561f7i-m1_A_G22_C23AAAAA04750.26 AA04
2571f7i-m2_A_G22_C23AAAAA00740.22 AA00
2581f7i-m3_A_G22_C23AAAAA08260.27 AA08
2591f7i-m4_A_G22_C23AAAAA00780.20 AA00
2601f7i-m5_A_G22_C23AAAAA04730.23 AA04
2611f7i-m6_A_G22_C23AAAAA04740.22 AA04
2621f7i-m7_A_G22_C23AAAAA00750.28 AA00
2631f7i-m8_A_G22_C23AAAAA04640.29 AA04
2641f7i-m9_A_G22_C23AAAAA00320.27 AA00
2651f7i-m10_A_C23_U24AAAAA00140.36 AA00
2661f7i-m11_A_C23_U24AAAAA08470.32 AA08
2671f7i-m12_A_C23_U24AAAAA08520.31 AA08
2681f7i-m1_A_C23_U24AAAAA08440.33 AA08
2691f7i-m2_A_C23_U24AAAAA08180.31 AA08
2701f7i-m3_A_C23_U24AAAAA00680.26 AA00
2711f7i-m4_A_C23_U24AAAAA04730.23 AA04
2721f7i-m5_A_C23_U24AAAAA08400.26 AA08
2731f7i-m6_A_C23_U24AAAAA08430.28 AA08
2741f7i-m7_A_C23_U24AAAAA08290.30 AA08
2751f7i-m8_A_C23_U24AAAAA08510.28 AA08
2761f7i-m9_A_C23_U24AAAAA08300.40 AA08
2771f7i-m10_A_U24_U25AAAAA04630.28 AA04
2781f7i-m11_A_U24_U25AAAAA04590.32 AA04
2791f7i-m12_A_U24_U25AAAAA04710.23 AA04
2801f7i-m1_A_U24_U25AAAAA04660.27 AA04
2811f7i-m2_A_U24_U25AAAAA00320.24 AA00
2821f7i-m3_A_U24_U25AAAAA00430.33 AA00
2831f7i-m4_A_U24_U25AAAAA04560.32 AA04
2841f7i-m5_A_U24_U25AAAAA04590.26 AA04
2851f7i-m6_A_U24_U25AAAAA00200.36 AA00
2861f7i-m7_A_U24_U25AAAAA04740.22 AA04
2871f7i-m8_A_U24_U25AAAAA00260.33 AA00
2881f7i-m9_A_U24_U25AAAAA00200.33 AA00
2891f7i-m10_A_U25_C26AAAAA04690.26 AA04
2901f7i-m11_A_U25_C26AAAAA00520.42 AA00
2911f7i-m12_A_U25_C26AAAAA00590.28 AA00
2921f7i-m1_A_U25_C26AAAAA00610.29 AA00
2931f7i-m2_A_U25_C26AAAAA04760.27 AA04
2941f7i-m3_A_U25_C26AAAAA00690.26 AA00
2951f7i-m4_A_U25_C26AAAAA00600.33 AA00
2961f7i-m5_A_U25_C26AAAAA00170.47 AA00
2971f7i-m6_A_U25_C26AAAAA00390.36 AA00
2981f7i-m7_A_U25_C26AAAAA08490.21 AA08
2991f7i-m8_A_U25_C26AAAAA00390.28 AA00
3001f7i-m9_A_U25_C26AAAAA04720.33 AA04
3011f7i-m10_A_C26_C27AAwAA01410.28 AA01
3021f7i-m11_A_C26_C27AAwAA01240.50 AA01
3031f7i-m12_A_C26_C27NANNANT00.49 AA01
3041f7i-m1_A_C26_C27NANNANT00.73 AA12
3051f7i-m2_A_C26_C27AAwAA06390.49 AA06
3061f7i-m3_A_C26_C27NANNANT00.77 AA12
3071f7i-m4_A_C26_C27NANNANT00.80 AA12
3081f7i-m5_A_C26_C27AAwAA01270.49 AA01
3091f7i-m6_A_C26_C27AAwAA01500.37 AA01
3101f7i-m7_A_C26_C27NANNANT00.72 AA00
3111f7i-m8_A_C26_C27NANNANT00.79 AA12
3121f7i-m9_A_C26_C27AAwAA01720.31 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N