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Conformers: ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES

Results of the assignment of 286 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011f7h-m10_A_G1_G2NANNANT00.95 BA05
0021f7h-m11_A_G1_G2AAAAA0070.48 AA00
0031f7h-m1_A_G1_G2NANNANT00.90 BA05
0041f7h-m2_A_G1_G2NANNANT00.90 BA05
0051f7h-m3_A_G1_G2NANNANT00.88 BA05
0061f7h-m4_A_G1_G2NANNANT00.89 BA05
0071f7h-m5_A_G1_G2NANNANT00.95 BA05
0081f7h-m6_A_G1_G2NANNANT00.52 AA02
0091f7h-m7_A_G1_G2NANNANT00.50 AA02
0101f7h-m8_A_G1_G2NANNANT00.90 BA05
0111f7h-m9_A_G1_G2NANNANT00.55 AAS1
0121f7h-m10_A_G2_A3AAAAA00460.25 AA00
0131f7h-m11_A_G2_A3AAAAA08360.24 AA08
0141f7h-m1_A_G2_A3AAAAA00280.35 AA00
0151f7h-m2_A_G2_A3NANNANT00.44 AA04
0161f7h-m3_A_G2_A3AAAAA00550.24 AA00
0171f7h-m4_A_G2_A3AAAAA04650.34 AA04
0181f7h-m5_A_G2_A3AAAAA00160.33 AA00
0191f7h-m6_A_G2_A3AAAAA04730.22 AA04
0201f7h-m7_A_G2_A3NANNANT00.44 AA04
0211f7h-m8_A_G2_A3NANNANT00.46 AA04
0221f7h-m9_A_G2_A3AAAAA08550.41 AA08
0231f7h-m10_A_A3_A4AAAAA00390.34 AA00
0241f7h-m11_A_A3_A4AAAAA00650.27 AA00
0251f7h-m1_A_A3_A4AAAAA00780.28 AA00
0261f7h-m2_A_A3_A4AAAAA00180.41 AA00
0271f7h-m3_A_A3_A4AAAAA00410.35 AA00
0281f7h-m4_A_A3_A4AAAAA00150.32 AA00
0291f7h-m5_A_A3_A4AAAAA00280.45 AA00
0301f7h-m6_A_A3_A4AAAAA00400.29 AA00
0311f7h-m7_A_A3_A4AAAAA00240.40 AA00
0321f7h-m8_A_A3_A4AAAAA00110.43 AA00
0331f7h-m9_A_A3_A4AAAAA08480.29 AA08
0341f7h-m10_A_A4_G5A-BAB04460.38 AB04
0351f7h-m11_A_A4_G5NANNANT00.51 AA10
0361f7h-m1_A_A4_G5A-BAB05490.31 AB05
0371f7h-m2_A_A4_G5NANNANT00.45 AA01
0381f7h-m3_A_A4_G5NANNANT00.49 BB03
0391f7h-m4_A_A4_G5A-BAB04380.36 AB04
0401f7h-m5_A_A4_G5AAAAA00390.26 AA00
0411f7h-m6_A_A4_G5NANNANT00.39 AA01
0421f7h-m7_A_A4_G5A-BAB05360.27 AB05
0431f7h-m8_A_A4_G5NANNANT00.42 AA01
0441f7h-m9_A_A4_G5NANNANT00.46 AA01
0451f7h-m10_A_G5_U6NANNANT01.46 AA07
0461f7h-m11_A_G5_U6NANNANT01.25 OP03
0471f7h-m1_A_G5_U6NANNANT01.16 BB20
0481f7h-m2_A_G5_U6NANNANT01.27 OP25
0491f7h-m3_A_G5_U6NANNANT01.22 OP25
0501f7h-m4_A_G5_U6NANNANT01.37 AA07
0511f7h-m5_A_G5_U6NANNANT01.71 OP28
0521f7h-m6_A_G5_U6NANNANT01.29 OP03
0531f7h-m7_A_G5_U6NANNANT00.67 BB20
0541f7h-m8_A_G5_U6NANNANT01.29 AA07
0551f7h-m9_A_G5_U6NANNANT01.35 OP03
0561f7h-m10_A_U6_C7NANNANT00.71 AA07
0571f7h-m11_A_U6_C7NANNANT00.95 AA07
0581f7h-m1_A_U6_C7NANNANT01.22 BA16
0591f7h-m2_A_U6_C7NANNANT00.91 AA11
0601f7h-m3_A_U6_C7NANNANT00.88 AA07
0611f7h-m4_A_U6_C7NANNANT00.99 OP16
0621f7h-m5_A_U6_C7NANNANT01.67 OP26
0631f7h-m6_A_U6_C7NANNANT00.80 AA07
0641f7h-m7_A_U6_C7NANNANT01.86 OP27
0651f7h-m8_A_U6_C7NANNANT00.83 AA12
0661f7h-m9_A_U6_C7NANNANT00.80 AA03
0671f7h-m10_A_C7_C8AAAAA00500.28 AA00
0681f7h-m11_A_C7_C8AAAAA00260.38 AA00
0691f7h-m1_A_C7_C8AAuAA12660.17 AA12
0701f7h-m2_A_C7_C8AAAAA04280.51 AA04
0711f7h-m3_A_C7_C8AAuAA12500.30 AA12
0721f7h-m4_A_C7_C8AAAAA03430.35 AA03
0731f7h-m5_A_C7_C8AAAAA00180.36 AA00
0741f7h-m6_A_C7_C8AAAAA00200.39 AA00
0751f7h-m7_A_C7_C8AAAAA00230.31 AA00
0761f7h-m8_A_C7_C8AAuAA12440.24 AA12
0771f7h-m9_A_C7_C8AAAAA00370.29 AA00
0781f7h-m10_A_C8_G9AAAAA00550.30 AA00
0791f7h-m11_A_C8_G9AAAAA00700.32 AA00
0801f7h-m1_A_C8_G9AAAAA00840.18 AA00
0811f7h-m2_A_C8_G9AAAAA00550.23 AA00
0821f7h-m3_A_C8_G9AAAAA00100.44 AA00
0831f7h-m4_A_C8_G9AAAAA00280.24 AA00
0841f7h-m5_A_C8_G9AAAAA00640.20 AA00
0851f7h-m6_A_C8_G9AAAAA00730.23 AA00
0861f7h-m7_A_C8_G9AAAAA00600.36 AA00
0871f7h-m8_A_C8_G9AAAAA00370.35 AA00
0881f7h-m9_A_C8_G9AAAAA00660.24 AA00
0891f7h-m10_A_G9_G10AAAAA00550.21 AA00
0901f7h-m11_A_G9_G10AAAAA00610.38 AA00
0911f7h-m1_A_G9_G10NANNANT00.47 AA00
0921f7h-m2_A_G9_G10AAAAA04730.21 AA04
0931f7h-m3_A_G9_G10AAAAA00660.23 AA00
0941f7h-m4_A_G9_G10AAAAA00310.32 AA00
0951f7h-m5_A_G9_G10AAAAA00320.19 AA00
0961f7h-m6_A_G9_G10AAAAA00280.43 AA00
0971f7h-m7_A_G9_G10AAAAA00640.29 AA00
0981f7h-m8_A_G9_G10AAAAA00750.20 AA00
0991f7h-m9_A_G9_G10AAAAA00540.22 AA00
1001f7h-m10_A_G10_U11AAAAA04410.54 AA04
1011f7h-m11_A_G10_U11NANNANT00.54 AB04
1021f7h-m1_A_G10_U11AAAAA04510.35 AA04
1031f7h-m2_A_G10_U11AAAAA00340.30 AA00
1041f7h-m3_A_G10_U11AAAAA04450.46 AA04
1051f7h-m4_A_G10_U11AAAAA00140.46 AA00
1061f7h-m5_A_G10_U11AAAAA00620.28 AA00
1071f7h-m6_A_G10_U11AAAAA04510.44 AA04
1081f7h-m7_A_G10_U11NANNANT00.53 AB04
1091f7h-m8_A_G10_U11AAAAA00660.26 AA00
1101f7h-m9_A_G10_U11AAAAA04630.38 AA04
1111f7h-m10_A_U11_C12NANNANT00.58 AA04
1121f7h-m11_A_U11_C12NANNANT00.36 AA04
1131f7h-m1_A_U11_C12NANNANT00.59 AA04
1141f7h-m2_A_U11_C12NANNANT00.58 AA04
1151f7h-m3_A_U11_C12NANNANT00.59 AA04
1161f7h-m4_A_U11_C12NANNANT00.60 AA04
1171f7h-m5_A_U11_C12NANNANT00.58 AA04
1181f7h-m6_A_U11_C12NANNANT00.57 AA04
1191f7h-m7_A_U11_C12NANNANT00.38 AA04
1201f7h-m8_A_U11_C12NANNANT00.55 AA04
1211f7h-m9_A_U11_C12NANNANT00.58 AA04
1221f7h-m10_A_C12_U13AAAAA04370.71 AA04
1231f7h-m11_A_C12_U13AAAAA04370.67 AA04
1241f7h-m1_A_C12_U13AAAAA04450.64 AA04
1251f7h-m2_A_C12_U13AAAAA04390.67 AA04
1261f7h-m3_A_C12_U13AAAAA04360.69 AA04
1271f7h-m4_A_C12_U13AAAAA04420.64 AA04
1281f7h-m5_A_C12_U13AAAAA04410.68 AA04
1291f7h-m6_A_C12_U13AAAAA04390.68 AA04
1301f7h-m7_A_C12_U13AAAAA04360.66 AA04
1311f7h-m8_A_C12_U13AAAAA04350.70 AA04
1321f7h-m9_A_C12_U13AAAAA04390.67 AA04
1331f7h-m10_A_U13_U14NANNANT02.47 OP17
1341f7h-m11_A_U13_U14NANNANT02.32 IC02
1351f7h-m1_A_U13_U14NANNANT02.39 IC02
1361f7h-m2_A_U13_U14NANNANT02.34 IC02
1371f7h-m3_A_U13_U14NANNANT02.36 IC02
1381f7h-m4_A_U13_U14NANNANT02.50 IC04
1391f7h-m5_A_U13_U14NANNANT02.23 IC03
1401f7h-m6_A_U13_U14NANNANT02.33 IC02
1411f7h-m7_A_U13_U14NANNANT02.31 IC02
1421f7h-m8_A_U13_U14NANNANT02.57 OP17
1431f7h-m9_A_U13_U14NANNANT02.37 IC02
1441f7h-m10_A_U14_C15NANNANT01.00 OP12
1451f7h-m11_A_U14_C15NANNANT01.11 ZZ01
1461f7h-m1_A_U14_C15NANNANT01.41 IC06
1471f7h-m2_A_U14_C15NANNANT01.10 ZZ01
1481f7h-m3_A_U14_C15NANNANT01.09 ZZ01
1491f7h-m4_A_U14_C15NANNANT01.66 BB13
1501f7h-m5_A_U14_C15NANNANT01.17 OP12
1511f7h-m6_A_U14_C15NANNANT01.09 ZZ01
1521f7h-m7_A_U14_C15NANNANT01.41 IC06
1531f7h-m8_A_U14_C15NANNANT01.43 AA05
1541f7h-m9_A_U14_C15NANNANT01.40 IC06
1551f7h-m10_A_C15_G16NANNANT00.68 ZZ1S
1561f7h-m11_A_C15_G16NANNANT00.95 BB08
1571f7h-m1_A_C15_G16NANNANT01.07 BB00
1581f7h-m2_A_C15_G16NANNANT01.09 BB00
1591f7h-m3_A_C15_G16NANNANT00.88 BB08
1601f7h-m4_A_C15_G16NANNANT01.36 BA09
1611f7h-m5_A_C15_G16NANNANT01.80 OP23
1621f7h-m6_A_C15_G16NANNANT00.95 BB08
1631f7h-m7_A_C15_G16NANNANT01.09 BB00
1641f7h-m8_A_C15_G16NANNANT01.85 OP23
1651f7h-m9_A_C15_G16NANNANT00.83 BB08
1661f7h-m10_A_G16_G17NANNANT00.62 AAS1
1671f7h-m11_A_G16_G17NANNANT00.52 AAS1
1681f7h-m1_A_G16_G17NANNANT00.54 AAS1
1691f7h-m2_A_G16_G17NANNANT00.59 AAS1
1701f7h-m3_A_G16_G17NANNANT00.59 AAS1
1711f7h-m4_A_G16_G17NANNANT00.56 AAS1
1721f7h-m5_A_G16_G17NANNANT00.64 AAS1
1731f7h-m6_A_G16_G17NANNANT00.64 AAS1
1741f7h-m7_A_G16_G17NANNANT00.53 AAS1
1751f7h-m8_A_G16_G17NANNANT00.50 AAS1
1761f7h-m9_A_G16_G17NANNANT00.59 AAS1
1771f7h-m10_A_G17_A18AAAAA00760.26 AA00
1781f7h-m11_A_G17_A18AAAAA00290.33 AA00
1791f7h-m1_A_G17_A18AAAAA00350.41 AA00
1801f7h-m2_A_G17_A18AAAAA04620.32 AA04
1811f7h-m3_A_G17_A18AAAAA04610.42 AA04
1821f7h-m4_A_G17_A18AAAAA00780.29 AA00
1831f7h-m5_A_G17_A18AAAAA00510.38 AA00
1841f7h-m6_A_G17_A18AAAAA08790.23 AA08
1851f7h-m7_A_G17_A18AAAAA00500.28 AA00
1861f7h-m8_A_G17_A18AAAAA00320.32 AA00
1871f7h-m9_A_G17_A18AAAAA00560.37 AA00
1881f7h-m10_A_A18_C19AAAAA00340.40 AA00
1891f7h-m11_A_A18_C19AAAAA00230.33 AA00
1901f7h-m1_A_A18_C19AAAAA00240.33 AA00
1911f7h-m2_A_A18_C19AAAAA00190.29 AA00
1921f7h-m3_A_A18_C19AAAAA00270.41 AA00
1931f7h-m4_A_A18_C19AAAAA00170.42 AA00
1941f7h-m5_A_A18_C19AAAAA08190.33 AA08
1951f7h-m6_A_A18_C19AAAAA04730.27 AA04
1961f7h-m7_A_A18_C19AAAAA04790.17 AA04
1971f7h-m8_A_A18_C19AAAAA00470.26 AA00
1981f7h-m9_A_A18_C19AAAAA00220.30 AA00
1991f7h-m10_A_C19_C20AAAAA00210.41 AA00
2001f7h-m11_A_C19_C20AAAAA00380.28 AA00
2011f7h-m1_A_C19_C20AAAAA0070.50 AA00
2021f7h-m2_A_C19_C20AAAAA00130.41 AA00
2031f7h-m3_A_C19_C20AAAAA00350.36 AA00
2041f7h-m4_A_C19_C20AAAAA00140.44 AA00
2051f7h-m5_A_C19_C20AAAAA00150.45 AA00
2061f7h-m6_A_C19_C20AAAAA00520.28 AA00
2071f7h-m7_A_C19_C20AAAAA00460.31 AA00
2081f7h-m8_A_C19_C20AAAAA00180.35 AA00
2091f7h-m9_A_C19_C20AAAAA00470.36 AA00
2101f7h-m10_A_C20_G21AAAAA04640.32 AA04
2111f7h-m11_A_C20_G21AAAAA00660.25 AA00
2121f7h-m1_A_C20_G21NANNANT00.70 AA02
2131f7h-m2_A_C20_G21AAAAA04700.23 AA04
2141f7h-m3_A_C20_G21NANNANT00.57 AA02
2151f7h-m4_A_C20_G21AAAAA04650.26 AA04
2161f7h-m5_A_C20_G21AAAAA04710.27 AA04
2171f7h-m6_A_C20_G21AAAAA00630.34 AA00
2181f7h-m7_A_C20_G21AAAAA00580.25 AA00
2191f7h-m8_A_C20_G21AAAAA00410.25 AA00
2201f7h-m9_A_C20_G21AAAAA04750.21 AA04
2211f7h-m10_A_G21_G22AAAAA08230.45 AA08
2221f7h-m11_A_G21_G22AAAAA08130.56 AA08
2231f7h-m1_A_G21_G22NANNANT00.41 AA12
2241f7h-m2_A_G21_G22AAAAA08410.32 AA08
2251f7h-m3_A_G21_G22NANNANT00.38 AA12
2261f7h-m4_A_G21_G22AAAAA08240.48 AA08
2271f7h-m5_A_G21_G22AAAAA08380.35 AA08
2281f7h-m6_A_G21_G22AAAAA08600.28 AA08
2291f7h-m7_A_G21_G22AAAAA0890.61 AA08
2301f7h-m8_A_G21_G22AAAAA08220.52 AA08
2311f7h-m9_A_G21_G22AAAAA08220.43 AA08
2321f7h-m10_A_G22_C23AAAAA08530.29 AA08
2331f7h-m11_A_G22_C23AAAAA04460.48 AA04
2341f7h-m1_A_G22_C23AAAAA08570.26 AA08
2351f7h-m2_A_G22_C23AAAAA04480.50 AA04
2361f7h-m3_A_G22_C23AAAAA00280.41 AA00
2371f7h-m4_A_G22_C23AAAAA04490.41 AA04
2381f7h-m5_A_G22_C23AAAAA00290.43 AA00
2391f7h-m6_A_G22_C23AAAAA04500.49 AA04
2401f7h-m7_A_G22_C23AAAAA08460.31 AA08
2411f7h-m8_A_G22_C23AAAAA04490.48 AA04
2421f7h-m9_A_G22_C23AAAAA04490.47 AA04
2431f7h-m10_A_C23_U24AAAAA04660.41 AA04
2441f7h-m11_A_C23_U24AAAAA08450.27 AA08
2451f7h-m1_A_C23_U24AAAAA08330.31 AA08
2461f7h-m2_A_C23_U24AAAAA04570.38 AA04
2471f7h-m3_A_C23_U24AAAAA08440.24 AA08
2481f7h-m4_A_C23_U24AAAAA04680.28 AA04
2491f7h-m5_A_C23_U24AAAAA04730.25 AA04
2501f7h-m6_A_C23_U24AAAAA04720.29 AA04
2511f7h-m7_A_C23_U24AAAAA04660.36 AA04
2521f7h-m8_A_C23_U24AAAAA00510.25 AA00
2531f7h-m9_A_C23_U24AAAAA00560.30 AA00
2541f7h-m10_A_U24_U25AAAAA00530.27 AA00
2551f7h-m11_A_U24_U25AAAAA04690.23 AA04
2561f7h-m1_A_U24_U25AAAAA04590.29 AA04
2571f7h-m2_A_U24_U25AAAAA00280.38 AA00
2581f7h-m3_A_U24_U25AAAAA00240.29 AA00
2591f7h-m4_A_U24_U25AAAAA00220.27 AA00
2601f7h-m5_A_U24_U25AAAAA00140.42 AA00
2611f7h-m6_A_U24_U25AAAAA00400.28 AA00
2621f7h-m7_A_U24_U25AAAAA00170.30 AA00
2631f7h-m8_A_U24_U25AAAAA00260.34 AA00
2641f7h-m9_A_U24_U25AAAAA00200.39 AA00
2651f7h-m10_A_U25_C26AAAAA00340.30 AA00
2661f7h-m11_A_U25_C26AAAAA00560.34 AA00
2671f7h-m1_A_U25_C26AAAAA00410.33 AA00
2681f7h-m2_A_U25_C26NANNANT00.69 AA12
2691f7h-m3_A_U25_C26AAAAA00530.38 AA00
2701f7h-m4_A_U25_C26AAAAA00160.41 AA00
2711f7h-m5_A_U25_C26AAAAA00140.48 AA00
2721f7h-m6_A_U25_C26AAAAA00650.27 AA00
2731f7h-m7_A_U25_C26AAAAA00170.50 AA00
2741f7h-m8_A_U25_C26AAAAA00200.39 AA00
2751f7h-m9_A_U25_C26NANNANT00.51 AA00
2761f7h-m10_A_C26_C27NANNANT00.68 AA12
2771f7h-m11_A_C26_C27AAwAA01260.50 AA01
2781f7h-m1_A_C26_C27AAuAA12290.70 AA12
2791f7h-m2_A_C26_C27AAwAA01530.26 AA01
2801f7h-m3_A_C26_C27AAwAA01580.25 AA01
2811f7h-m4_A_C26_C27AAuAA12370.64 AA12
2821f7h-m5_A_C26_C27AAwAA01220.46 AA01
2831f7h-m6_A_C26_C27NANNANT00.67 AA12
2841f7h-m7_A_C26_C27AAwAA01230.51 AA01
2851f7h-m8_A_C26_C27AAAAA04750.34 AA04
2861f7h-m9_A_C26_C27NANNANT00.72 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N