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Conformers: ABBIImiBZICOPNSYNN
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2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011f66_I_DA1_DT2B12BB04670.23 BB04
0021f66_I_DT2_DC3BBBBB00250.40 BB00
0031f66_I_DC3_DA4BB2BB07530.19 BB07
0041f66_I_DA4_DA5BBBBB00970.12 BB00
0051f66_I_DA5_DT6BBwBB02120.39 BB02
0061f66_I_DT6_DA7BBBBB00800.19 BB00
0071f66_I_DA7_DT8BBBBB00550.14 BB00
0081f66_I_DT8_DC9B12BB04400.25 BB04
0091f66_I_DC9_DC10BBBBB00820.27 BB00
0101f66_I_DC10_DA11B12BB04240.31 BB04
0111f66_I_DA11_DC12B12BB04760.27 BB04
0121f66_I_DC12_DC13BBBBB00670.36 BB00
0131f66_I_DC13_DT14BBBBB00530.31 BB00
0141f66_I_DT14_DG15BB2BB07660.34 BB07
0151f66_I_DG15_DC16BBBBB00760.17 BB00
0161f66_I_DC16_DA17BB2BB07560.23 BB07
0171f66_I_DA17_DG18B12BB04390.29 BB04
0181f66_I_DG18_DA19BBBBB00770.27 BB00
0191f66_I_DA19_DT20B12BB04730.30 BB04
0201f66_I_DT20_DT21B12BB04850.40 BB04
0211f66_I_DT21_DC22NANNANT00.64 BB13
0221f66_I_DC22_DT23BBwBB17550.33 BB17
0231f66_I_DT23_DA24BBBBB00790.21 BB00
0241f66_I_DA24_DC25BBBBB00630.36 BB00
0251f66_I_DC25_DC26NANNANT00.31 BB00
0261f66_I_DC26_DA27NANNANT00.78 BB10
0271f66_I_DA27_DA28BBBBB00350.24 BB00
0281f66_I_DA28_DA29B12BB04330.31 BB04
0291f66_I_DA29_DA30BBBBB00900.21 BB00
0301f66_I_DA30_DG31B12BB04770.13 BB04
0311f66_I_DG31_DT32BBBBB00360.45 BB00
0321f66_I_DT32_DG33BBBBB00800.26 BB00
0331f66_I_DG33_DT34miBBB13570.41 BB13
0341f66_I_DT34_DA35BBBBB00630.35 BB00
0351f66_I_DA35_DT36BBBBB00760.28 BB00
0361f66_I_DT36_DT37BBBBB00650.42 BB00
0371f66_I_DT37_DT38BBBBB00920.15 BB00
0381f66_I_DT38_DG39BB2BB07800.31 BB07
0391f66_I_DG39_DG40BBBBB00780.26 BB00
0401f66_I_DG40_DA41BB2BB07860.37 BB07
0411f66_I_DA41_DA42BBBBB00670.21 BB00
0421f66_I_DA42_DA43BBBBB00880.18 BB00
0431f66_I_DA43_DC44BBBBB00890.22 BB00
0441f66_I_DC44_DT45BBBBB00720.29 BB00
0451f66_I_DT45_DG46B12BB04760.28 BB04
0461f66_I_DG46_DC47B12BB04660.32 BB04
0471f66_I_DC47_DT48NANNANT00.50 BB08
0481f66_I_DT48_DC49BBBBB00630.39 BB00
0491f66_I_DC49_DC50BB2BB07650.24 BB07
0501f66_I_DC50_DA51BBBBB00810.26 BB00
0511f66_I_DA51_DT52BBBBB00870.20 BB00
0521f66_I_DT52_DC53B12BB04550.31 BB04
0531f66_I_DC53_DA54B12BB04620.34 BB04
0541f66_I_DA54_DA55BBBBB00310.34 BB00
0551f66_I_DA55_DA56B12BB04850.24 BB04
0561f66_I_DA56_DA57B12BB04750.21 BB04
0571f66_I_DA57_DG58BBBBB00570.30 BB00
0581f66_I_DG58_DG59BB2BB07740.35 BB07
0591f66_I_DG59_DC60BBBBB00860.22 BB00
0601f66_I_DC60_DA61BBBBB00670.38 BB00
0611f66_I_DA61_DT62BBwBB02450.25 BB02
0621f66_I_DT62_DG63BBBBB00730.39 BB00
0631f66_I_DG63_DT64BBBBB00720.35 BB00
0641f66_I_DT64_DT65BBBBB00890.14 BB00
0651f66_I_DT65_DC66BBBBB00650.27 BB00
0661f66_I_DC66_DA67BB2BB07860.26 BB07
0671f66_I_DA67_DG68BBBBB00620.23 BB00
0681f66_I_DG68_DC69BB2BB07740.26 BB07
0691f66_I_DC69_DG70BBBBB00810.25 BB00
0701f66_I_DG70_DG71BBBBB00800.23 BB00
0711f66_I_DG71_DA72B12BB04490.21 BB04
0721f66_I_DA72_DA73BBBBB00760.12 BB00
0731f66_I_DA73_DT74BBBBB00670.16 BB00
0741f66_I_DT74_DT75BBBBB00740.21 BB00
0751f66_I_DT75_DC76BBBBB00930.16 BB00
0761f66_I_DC76_DC77BB2BB07880.17 BB07
0771f66_I_DC77_DG78B12BB04520.42 BB04
0781f66_I_DG78_DC79BB2BB07580.21 BB07
0791f66_I_DC79_DT80BB2BB07470.29 BB07
0801f66_I_DT80_DG81B12BB04720.21 BB04
0811f66_I_DG81_DA82BBBBB00940.15 BB00
0821f66_I_DA82_DA83BBBBB00890.11 BB00
0831f66_I_DA83_DC84BBBBB00700.20 BB00
0841f66_I_DC84_DA85B12BB04760.16 BB04
0851f66_I_DA85_DT86BBBBB00880.16 BB00
0861f66_I_DT86_DG87BBBBB00780.22 BB00
0871f66_I_DG87_DC88BB2BB07380.32 BB07
0881f66_I_DC88_DC89B12BB04650.36 BB04
0891f66_I_DC89_DT90BB2BB07470.22 BB07
0901f66_I_DT90_DT91BBBBB00730.15 BB00
0911f66_I_DT91_DT92BBBBB00750.14 BB00
0921f66_I_DT92_DT93BBBBB00500.20 BB00
0931f66_I_DT93_DG94BBwBB02730.17 BB02
0941f66_I_DG94_DA95BBBBB00800.28 BB00
0951f66_I_DA95_DT96BBBBB00160.43 BB00
0961f66_I_DT96_DG97B12BB04740.24 BB04
0971f66_I_DG97_DG98BBBBB00870.22 BB00
0981f66_I_DG98_DA99BB2BB07130.37 BB07
0991f66_I_DA99_DG100BBBBB00720.28 BB00
1001f66_I_DG100_DC101BB2BB07600.25 BB07
1011f66_I_DC101_DA102BBBBB00800.19 BB00
1021f66_I_DA102_DG103B12BB04820.21 BB04
1031f66_I_DG103_DT104BBBBB00900.18 BB00
1041f66_I_DT104_DT105BBBBB00870.18 BB00
1051f66_I_DT105_DT106B12BB04810.18 BB04
1061f66_I_DT106_DC107BBBBB00720.30 BB00
1071f66_I_DC107_DC108B12BB04550.27 BB04
1081f66_I_DC108_DA109BB2BB07590.28 BB07
1091f66_I_DA109_DA110BBBBB00900.15 BB00
1101f66_I_DA110_DA111BBBBB00650.25 BB00
1111f66_I_DA111_DT112BBBBB00790.35 BB00
1121f66_I_DT112_DA113BBBBB00970.11 BB00
1131f66_I_DA113_DC114miBBB13720.26 BB13
1141f66_I_DC114_DA115BBBBB00380.44 BB00
1151f66_I_DA115_DC116BBBBB00870.19 BB00
1161f66_I_DC116_DT117BBBBB00820.25 BB00
1171f66_I_DT117_DT118BBBBB00820.18 BB00
1181f66_I_DT118_DT119NANNANT00.34 BA08
1191f66_I_DT119_DT120A-BAB02570.48 AB02
1201f66_I_DT120_DG121BB2BB07550.27 BB07
1211f66_I_DG121_DG122BBBBB00840.19 BB00
1221f66_I_DG122_DT123BBBBB00760.17 BB00
1231f66_I_DT123_DA124BBBBB00530.28 BB00
1241f66_I_DA124_DG125BBBBB00760.25 BB00
1251f66_I_DG125_DA126BBBBB00360.44 BB00
1261f66_I_DA126_DA127BBBBB00760.28 BB00
1271f66_I_DA127_DT128BBBBB00760.28 BB00
1281f66_I_DT128_DC129BBBBB00840.33 BB00
1291f66_I_DC129_DT130BBBBB00760.25 BB00
1301f66_I_DT130_DG131BB2BB07820.24 BB07
1311f66_I_DG131_DC132BBBBB00510.19 BB00
1321f66_I_DC132_DA133BB2BB07880.24 BB07
1331f66_I_DA133_DG134BBBBB00300.32 BB00
1341f66_I_DG134_DG135BBBBB00540.44 BB00
1351f66_I_DG135_DT136BBBBB00190.52 BB00
1361f66_I_DT136_DG137BBBBB00790.15 BB00
1371f66_I_DG137_DG138B12BB04550.34 BB04
1381f66_I_DG138_DA139B12BB04930.16 BB04
1391f66_I_DA139_DT140BBBBB00830.16 BB00
1401f66_I_DT140_DA141B12BB04680.22 BB04
1411f66_I_DA141_DT142BBBBB00780.20 BB00
1421f66_I_DT142_DT143BBBBB00870.18 BB00
1431f66_I_DT143_DG144BBBBB00860.24 BB00
1441f66_I_DG144_DA145B12BB04920.15 BB04
1451f66_I_DA145_DT146BBBBB00840.14 BB00
1461f66_J_DA147_DT148B12BB04370.29 BB04
1471f66_J_DT148_DC149NANNANT00.61 BB13
1481f66_J_DC149_DA150NANNANT00.55 AB02
1491f66_J_DA150_DA151B12BB04900.15 BB04
1501f66_J_DA151_DT152BBwBB02710.20 BB02
1511f66_J_DT152_DA153B12BB04320.25 BB04
1521f66_J_DA153_DT154BBBBB00900.17 BB00
1531f66_J_DT154_DC155BBBBB00730.14 BB00
1541f66_J_DC155_DC156B12BB04640.27 BB04
1551f66_J_DC156_DA157B12BB04470.20 BB04
1561f66_J_DA157_DC158BBBBB00660.29 BB00
1571f66_J_DC158_DC159BBBBB00810.23 BB00
1581f66_J_DC159_DT160B12BB04760.26 BB04
1591f66_J_DT160_DG161BB2BB07760.22 BB07
1601f66_J_DG161_DC162BBBBB00580.36 BB00
1611f66_J_DC162_DA163BB2BB07590.26 BB07
1621f66_J_DA163_DG164BBBBB00640.25 BB00
1631f66_J_DG164_DA165BBBBB00810.26 BB00
1641f66_J_DA165_DT166BBBBB00880.19 BB00
1651f66_J_DT166_DT167B12BB04650.27 BB04
1661f66_J_DT167_DC168NANNANT00.49 BB00
1671f66_J_DC168_DT169BBBBB00590.26 BB00
1681f66_J_DT169_DA170BBBBB00490.23 BB00
1691f66_J_DA170_DC171BBBBB00690.31 BB00
1701f66_J_DC171_DC172BBBBB00490.29 BB00
1711f66_J_DC172_DA173BB2BB07690.37 BB07
1721f66_J_DA173_DA174BBBBB00390.38 BB00
1731f66_J_DA174_DA175BBwBB02400.43 BB02
1741f66_J_DA175_DA176BBBBB00240.44 BB00
1751f66_J_DA176_DG177B12BB04760.15 BB04
1761f66_J_DG177_DT178BBBBB00680.34 BB00
1771f66_J_DT178_DG179BBBBB00690.23 BB00
1781f66_J_DG179_DT180BBBBB00900.17 BB00
1791f66_J_DT180_DA181BBBBB00880.25 BB00
1801f66_J_DA181_DT182BBBBB00890.26 BB00
1811f66_J_DT182_DT183BBBBB00890.20 BB00
1821f66_J_DT183_DT184BBBBB00680.18 BB00
1831f66_J_DT184_DG185BB2BB07710.28 BB07
1841f66_J_DG185_DG186BBBBB00710.31 BB00
1851f66_J_DG186_DA187BB2BB07860.27 BB07
1861f66_J_DA187_DA188BBBBB00800.19 BB00
1871f66_J_DA188_DA189BBBBB00880.12 BB00
1881f66_J_DA189_DC190BBBBB00640.26 BB00
1891f66_J_DC190_DT191BBBBB00780.28 BB00
1901f66_J_DT191_DG192BB2BB07440.27 BB07
1911f66_J_DG192_DC193BBBBB00890.23 BB00
1921f66_J_DC193_DT194B12BB04700.33 BB04
1931f66_J_DT194_DC195BBBBB00640.32 BB00
1941f66_J_DC195_DC196BB2BB07670.26 BB07
1951f66_J_DC196_DA197BBBBB00780.26 BB00
1961f66_J_DA197_DT198BBwBB02310.25 BB02
1971f66_J_DT198_DC199B12BB04480.21 BB04
1981f66_J_DC199_DA200BBBBB00530.33 BB00
1991f66_J_DA200_DA201BBBBB00800.14 BB00
2001f66_J_DA201_DA202B12BB04870.22 BB04
2011f66_J_DA202_DA203BBBBB00540.32 BB00
2021f66_J_DA203_DG204BB2BB07830.11 BB07
2031f66_J_DG204_DG205BB2BB07800.20 BB07
2041f66_J_DG205_DC206BBBBB00810.22 BB00
2051f66_J_DC206_DA207B12BB04740.22 BB04
2061f66_J_DA207_DT208BBBBB00840.15 BB00
2071f66_J_DT208_DG209BBBBB00680.20 BB00
2081f66_J_DG209_DT210miBBB15740.24 BB15
2091f66_J_DT210_DT211BBBBB00880.11 BB00
2101f66_J_DT211_DC212BBBBB00750.18 BB00
2111f66_J_DC212_DA213B12BB04630.24 BB04
2121f66_J_DA213_DG214BB2BB07890.26 BB07
2131f66_J_DG214_DC215BBBBB00720.27 BB00
2141f66_J_DC215_DG216BB2BB07910.16 BB07
2151f66_J_DG216_DG217BBBBB00670.28 BB00
2161f66_J_DG217_DA218BBBBB00840.15 BB00
2171f66_J_DA218_DA219B12BB04640.17 BB04
2181f66_J_DA219_DT220BBBBB00790.19 BB00
2191f66_J_DT220_DT221BBBBB00790.18 BB00
2201f66_J_DT221_DC222BBBBB00690.19 BB00
2211f66_J_DC222_DC223B12BB04670.27 BB04
2221f66_J_DC223_DG224BB2BB07770.14 BB07
2231f66_J_DG224_DC225B12BB04640.36 BB04
2241f66_J_DC225_DT226BB2BB07490.21 BB07
2251f66_J_DT226_DG227BB2BB08740.36 BB08
2261f66_J_DG227_DA228BBBBB00670.37 BB00
2271f66_J_DA228_DA229BBBBB00790.16 BB00
2281f66_J_DA229_DC230BBBBB00680.27 BB00
2291f66_J_DC230_DA231B12BB04650.36 BB04
2301f66_J_DA231_DT232B12BB04840.28 BB04
2311f66_J_DT232_DG233BBBBB00820.34 BB00
2321f66_J_DG233_DC234BBBBB00180.49 BB00
2331f66_J_DC234_DC235NANNANT00.38 BB07
2341f66_J_DC235_DT236NANNANT00.48 BB10
2351f66_J_DT236_DT237BBBBB00620.31 BB00
2361f66_J_DT237_DT238BBBBB00830.18 BB00
2371f66_J_DT238_DT239BBBBB00830.16 BB00
2381f66_J_DT239_DG240B12BB04810.30 BB04
2391f66_J_DG240_DA241B12BB04740.21 BB04
2401f66_J_DA241_DT242BBBBB00570.34 BB00
2411f66_J_DT242_DG243BBwBB11680.41 BB11
2421f66_J_DG243_DG244NANNANT00.37 BB16
2431f66_J_DG244_DA245BB2BB07590.25 BB07
2441f66_J_DA245_DG246BBwBB0270.52 BB02
2451f66_J_DG246_DC247B12BB04400.31 BB04
2461f66_J_DC247_DA248BBwBB11480.38 BB11
2471f66_J_DA248_DG249BBBBB00520.39 BB00
2481f66_J_DG249_DT250BBBBB00770.28 BB00
2491f66_J_DT250_DT251BBBBB00610.15 BB00
2501f66_J_DT251_DT252B12BB04740.24 BB04
2511f66_J_DT252_DC253BBBBB00690.45 BB00
2521f66_J_DC253_DC254BB2BB07800.28 BB07
2531f66_J_DC254_DA255BB2BB07670.28 BB07
2541f66_J_DA255_DA256BBBBB00840.18 BB00
2551f66_J_DA256_DA257B12BB04680.19 BB04
2561f66_J_DA257_DT258B12BB04810.25 BB04
2571f66_J_DT258_DA259BBBBB00720.33 BB00
2581f66_J_DA259_DC260B12BB04530.20 BB04
2591f66_J_DC260_DA261BBBBB00730.32 BB00
2601f66_J_DA261_DC262BBwBB02720.24 BB02
2611f66_J_DC262_DT263BBBBB00590.23 BB00
2621f66_J_DT263_DT264BBBBB00860.28 BB00
2631f66_J_DT264_DT265BBBBB00690.26 BB00
2641f66_J_DT265_DT266BBBBB00840.26 BB00
2651f66_J_DT266_DG267B12BB04650.33 BB04
2661f66_J_DG267_DG268BBwBB02680.28 BB02
2671f66_J_DG268_DT269BBBBB00460.29 BB00
2681f66_J_DT269_DA270B12BB04580.22 BB04
2691f66_J_DA270_DG271BBBBB00760.25 BB00
2701f66_J_DG271_DA272B12BB04680.37 BB04
2711f66_J_DA272_DA273BBBBB00430.45 BB00
2721f66_J_DA273_DT274B12BB04590.33 BB04
2731f66_J_DT274_DC275BBBBB00640.40 BB00
2741f66_J_DC275_DT276BBBBB00420.41 BB00
2751f66_J_DT276_DG277BB2BB07860.18 BB07
2761f66_J_DG277_DC278BBBBB00710.21 BB00
2771f66_J_DC278_DA279BB2BB07910.25 BB07
2781f66_J_DA279_DG280BBBBB00370.41 BB00
2791f66_J_DG280_DG281B12BB04720.16 BB04
2801f66_J_DG281_DT282BBBBB00630.30 BB00
2811f66_J_DT282_DG283BBBBB00630.24 BB00
2821f66_J_DG283_DG284B12BB04330.40 BB04
2831f66_J_DG284_DA285B12BB04290.42 BB04
2841f66_J_DA285_DT286BBBBB00900.19 BB00
2851f66_J_DT286_DA287miBBB13830.25 BB13
2861f66_J_DA287_DT288BBwBB16280.57 BB16
2871f66_J_DT288_DT289BBwBB02660.16 BB02
2881f66_J_DT289_DG290BBBBB00740.25 BB00
2891f66_J_DG290_DA291B12BB04880.19 BB04
2901f66_J_DA291_DT292BBBBB00750.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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