Conformers:
ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM-LOOP IN THE 5'-END DIMERIZATION SIGNAL OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1f5u_A_G1_G2 | AAA | AA04 | 52 | 0.28 |
| 02 | 1f5u_A_G2_U3 | AAA | AA00 | 28 | 0.19 |
| 03 | 1f5u_A_U3_G4 | AAA | AA00 | 86 | 0.24 |
| 04 | 1f5u_A_G4_G5 | AAA | AA00 | 79 | 0.21 |
| 05 | 1f5u_A_G5_G6 | AAA | AA00 | 94 | 0.16 |
| 06 | 1f5u_A_G6_A7 | AAA | AA04 | 84 | 0.18 |
| 07 | 1f5u_A_A7_G8 | AAA | AA08 | 5 | 0.47 |
| 08 | 1f5u_A_G8_A9 | NAN | NANT | 0 | 0.56 |
| 09 | 1f5u_A_A9_C10 | NAN | NANT | 0 | 0.68 |
| 10 | 1f5u_A_C10_G11 | AAw | AA01 | 38 | 0.48 |
| 11 | 1f5u_A_G11_U12 | NAN | NANT | 0 | 1.34 |
| 12 | 1f5u_A_U12_C13 | AAA | AA00 | 36 | 0.28 |
| 13 | 1f5u_A_C13_C14 | AAA | AA08 | 76 | 0.18 |
| 14 | 1f5u_A_C14_C15 | AAA | AA00 | 66 | 0.24 |
| 15 | 1f5u_A_C15_A16 | AAA | AA00 | 67 | 0.23 |
| 16 | 1f5u_A_A16_C17 | AAA | AA00 | 54 | 0.25 |
| 17 | 1f5u_A_C17_C18 | AAA | AA04 | 81 | 0.28 |
| 18 | 1f5u_B_G1_G2 | AAA | AA04 | 58 | 0.24 |
| 19 | 1f5u_B_G2_U3 | AAA | AA00 | 62 | 0.21 |
| 20 | 1f5u_B_U3_G4 | AAA | AA00 | 72 | 0.26 |
| 21 | 1f5u_B_G4_G5 | AAA | AA00 | 81 | 0.18 |
| 22 | 1f5u_B_G5_G6 | AAA | AA00 | 90 | 0.16 |
| 23 | 1f5u_B_G6_A7 | AAA | AA00 | 63 | 0.23 |
| 24 | 1f5u_B_A7_G8 | AAw | AA06 | 49 | 0.29 |
| 25 | 1f5u_B_G8_A9 | NAN | NANT | 0 | 0.60 |
| 26 | 1f5u_B_A9_C10 | AAw | AA11 | 25 | 0.43 |
| 27 | 1f5u_B_C10_G11 | AAw | AA01 | 50 | 0.42 |
| 28 | 1f5u_B_G11_U12 | NAN | NANT | 0 | 1.31 |
| 29 | 1f5u_B_U12_C13 | AAA | AA08 | 29 | 0.30 |
| 30 | 1f5u_B_C13_C14 | AAA | AA08 | 67 | 0.20 |
| 31 | 1f5u_B_C14_C15 | AAA | AA04 | 79 | 0.19 |
| 32 | 1f5u_B_C15_A16 | AAA | AA08 | 65 | 0.24 |
| 33 | 1f5u_B_A16_C17 | AAA | AA00 | 62 | 0.20 |
| 34 | 1f5u_B_C17_C18 | AAA | AA04 | 83 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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