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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA

Results of the assignment of 78 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011f2i_A_DA1001_DT1002NANNANT00.45 BBS1
021f2i_A_DT1002_DG1003B12BB04380.18 BB04
031f2i_A_DG1003_DG1004BBBBB00430.42 BB00
041f2i_A_DG1004_DG1005BBBBB00820.25 BB00
051f2i_A_DG1005_DC1006BBBBB00630.23 BB00
061f2i_A_DC1006_DG1007BB2BB07930.20 BB07
071f2i_A_DG1007_DC1008B12BB04870.22 BB04
081f2i_A_DC1008_DG1009BBBBB00820.24 BB00
091f2i_A_DG1009_DC1010BB2BB07440.38 BB07
101f2i_A_DC1010_DC1011BBBBB00650.25 BB00
111f2i_A_DC1011_DC1012BBBBB00290.35 BB00
121f2i_A_DC1012_DA1013BB2BB07500.22 BB07
131f2i_A_DA1013_DT1014BBwBB02810.17 BB02
141f2i_B_DA2001_DT2002SYNBBS1690.32 BBS1
151f2i_B_DT2002_DG2003BB2BB07260.38 BB07
161f2i_B_DG2003_DG2004BBBBB00410.37 BB00
171f2i_B_DG2004_DG2005BBwBB02910.20 BB02
181f2i_B_DG2005_DC2006BBBBB00720.30 BB00
191f2i_B_DC2006_DG2007BB2BB07880.27 BB07
201f2i_B_DG2007_DC2008BBBBB00660.27 BB00
211f2i_B_DC2008_DG2009BBBBB00820.25 BB00
221f2i_B_DG2009_DC2010B12BB04720.21 BB04
231f2i_B_DC2010_DC2011BBBBB00700.29 BB00
241f2i_B_DC2011_DC2012BBBBB00770.31 BB00
251f2i_B_DC2012_DA2013B12BB04680.27 BB04
261f2i_B_DA2013_DT2014NANNANT00.26 BB02
271f2i_C_DA3001_DT3002SYNBBS1810.28 BBS1
281f2i_C_DT3002_DG3003B-ABA17790.19 BA17
291f2i_C_DG3003_DG3004BBBBB00380.40 BB00
301f2i_C_DG3004_DG3005BBBBB00760.24 BB00
311f2i_C_DG3005_DC3006BBBBB00730.22 BB00
321f2i_C_DC3006_DG3007BB2BB07790.27 BB07
331f2i_C_DG3007_DC3008BBBBB00890.16 BB00
341f2i_C_DC3008_DG3009BBBBB00770.26 BB00
351f2i_C_DG3009_DC3010BB2BB07530.39 BB07
361f2i_C_DC3010_DC3011BBBBB00640.28 BB00
371f2i_C_DC3011_DC3012BBBBB00820.24 BB00
381f2i_C_DC3012_DA3013B12BB04870.20 BB04
391f2i_C_DA3013_DT3014BBwBB02870.12 BB02
401f2i_D_DA4001_DT4002NANNANT00.46 BBS1
411f2i_D_DT4002_DG4003NANNANT00.30 BA08
421f2i_D_DG4003_DG4004BBBBB00470.36 BB00
431f2i_D_DG4004_DG4005BBBBB00610.27 BB00
441f2i_D_DG4005_DC4006BBBBB00520.25 BB00
451f2i_D_DC4006_DG4007BB2BB07860.25 BB07
461f2i_D_DG4007_DC4008B12BB04740.21 BB04
471f2i_D_DC4008_DG4009BBBBB00850.27 BB00
481f2i_D_DG4009_DC4010B12BB04670.24 BB04
491f2i_D_DC4010_DC4011BBBBB00370.28 BB00
501f2i_D_DC4011_DC4012BBBBB00750.31 BB00
511f2i_D_DC4012_DA4013B12BB04650.25 BB04
521f2i_D_DA4013_DT4014BBwBB02720.20 BB02
531f2i_E_DA5001_DT5002NANNANT00.64 BBS1
541f2i_E_DT5002_DG5003BBBBB00740.28 BB00
551f2i_E_DG5003_DG5004B12BB04670.26 BB04
561f2i_E_DG5004_DG5005BBBBB00600.31 BB00
571f2i_E_DG5005_DC5006miBBB15680.28 BB15
581f2i_E_DC5006_DG5007BB2BB07940.23 BB07
591f2i_E_DG5007_DC5008BBBBB00700.26 BB00
601f2i_E_DC5008_DG5009BBBBB00800.27 BB00
611f2i_E_DG5009_DC5010BB2BB07520.34 BB07
621f2i_E_DC5010_DC5011BBwBB02690.26 BB02
631f2i_E_DC5011_DC5012BBBBB00710.40 BB00
641f2i_E_DC5012_DA5013B12BB04840.16 BB04
651f2i_E_DA5013_DT5014BBwBB02150.38 BB02
661f2i_F_DA6001_DT6002NANNANT00.64 BA10
671f2i_F_DT6002_DG6003B12BB04620.26 BB04
681f2i_F_DG6003_DG6004BBBBB00430.40 BB00
691f2i_F_DG6004_DG6005BBBBB00820.20 BB00
701f2i_F_DG6005_DC6006BBBBB00820.17 BB00
711f2i_F_DC6006_DG6007BB2BB07850.26 BB07
721f2i_F_DG6007_DC6008B12BB04700.28 BB04
731f2i_F_DC6008_DG6009BBBBB00780.24 BB00
741f2i_F_DG6009_DC6010B12BB04730.23 BB04
751f2i_F_DC6010_DC6011NANNANT00.34 BB15
761f2i_F_DC6011_DC6012BBBBB00800.25 BB00
771f2i_F_DC6012_DA6013B12BB04710.20 BB04
781f2i_F_DA6013_DT6014BBwBB02300.33 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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