Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1f1t_A_G1_G2 | AAA | AA00 | 73 | 0.16 |
| 02 | 1f1t_A_G2_A3 | AAA | AA08 | 72 | 0.28 |
| 03 | 1f1t_A_A3_5BU4 | AAA | AA08 | 85 | 0.20 |
| 04 | 1f1t_A_5BU4_C5 | AAA | AA00 | 83 | 0.23 |
| 05 | 1f1t_A_C5_C6 | AAA | AA00 | 28 | 0.24 |
| 06 | 1f1t_A_C6_C7 | AAA | AA04 | 63 | 0.32 |
| 07 | 1f1t_A_C7_G8 | ICL | IC02 | 64 | 0.29 |
| 08 | 1f1t_A_G8_A9 | NAN | NANT | 0 | 0.60 |
| 09 | 1f1t_A_A9_C10 | NAN | NANT | 0 | 1.30 |
| 10 | 1f1t_A_C10_5BU11 | AAA | AA00 | 76 | 0.19 |
| 11 | 1f1t_A_5BU11_G12 | AAA | AA00 | 95 | 0.09 |
| 12 | 1f1t_A_G12_G13 | AAA | AA00 | 92 | 0.16 |
| 13 | 1f1t_A_G13_C14 | AAA | AA00 | 30 | 0.16 |
| 14 | 1f1t_A_C14_G15 | AAw | AA01 | 70 | 0.32 |
| 15 | 1f1t_A_G15_A16 | NAN | NANT | 0 | 0.83 |
| 16 | 1f1t_A_A16_G17 | NAN | NANT | 0 | 1.85 |
| 17 | 1f1t_A_G17_A18 | AAA | AA00 | 81 | 0.20 |
| 18 | 1f1t_A_A18_G19 | AAw | AA05 | 76 | 0.19 |
| 19 | 1f1t_A_G19_C20 | AAA | AA00 | 15 | 0.39 |
| 20 | 1f1t_A_C20_C21 | NAN | NANT | 0 | 0.43 |
| 21 | 1f1t_A_C21_A22 | AAA | AA08 | 78 | 0.21 |
| 22 | 1f1t_A_A22_G23 | AAA | AA00 | 54 | 0.29 |
| 23 | 1f1t_A_G23_G24 | NAN | NANT | 0 | 1.79 |
| 24 | 1f1t_A_G24_5BU25 | NAN | NANT | 0 | 1.74 |
| 25 | 1f1t_A_5BU25_A26 | NAN | NANT | 0 | 0.38 |
| 26 | 1f1t_A_A26_A27 | AAA | AA00 | 73 | 0.20 |
| 27 | 1f1t_A_A27_C28 | AAA | AA00 | 71 | 0.31 |
| 28 | 1f1t_A_C28_G29 | ICL | IC02 | 41 | 0.39 |
| 29 | 1f1t_A_G29_A30 | NAN | NANT | 0 | 1.01 |
| 30 | 1f1t_A_A30_A31 | NAN | NANT | 0 | 0.85 |
| 31 | 1f1t_A_A31_5BU32 | NAN | NANT | 0 | 0.33 |
| 32 | 1f1t_A_5BU32_G33 | NAN | NANT | 0 | 1.17 |
| 33 | 1f1t_A_G33_G34 | AAA | AA00 | 40 | 0.30 |
| 34 | 1f1t_A_G34_A35 | AAw | AA01 | 52 | 0.19 |
| 35 | 1f1t_A_A35_5BU36 | AAA | AA00 | 62 | 0.19 |
| 36 | 1f1t_A_5BU36_C37 | AAA | AA00 | 87 | 0.17 |
| 37 | 1f1t_A_C37_C38 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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