Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011exd_B_G902_G903AAAAA00450.30 AA00
021exd_B_G903_G904AAAAA00840.26 AA00
031exd_B_G904_G905AAwAA01940.15 AA01
041exd_B_G905_U906AAAAA00780.22 AA00
051exd_B_U906_A907NANNANT00.49 AA01
061exd_B_A907_U908NANNANT00.42 OP11
071exd_B_U908_C909NANNANT00.70 IC07
081exd_B_C909_G910NANNANT00.74 ZZ01
091exd_B_G910_C911AAAAA00720.23 AA00
101exd_B_C911_C912AAwAA01970.14 AA01
111exd_B_C912_A913AAAAA08550.54 AA08
121exd_B_A913_A914NANNANT00.69 AA10
131exd_B_A914_G915AAAAA08750.27 AA08
141exd_B_G915_C916NANNANT00.96 OP12
151exd_B_C916_G918NANNANT01.71 AA13
161exd_B_G918_G919NANNANT01.38 OP26
171exd_B_G919_U920NANNANT00.81 OP15
181exd_B_U920_A921NANNANT00.77 OP06
191exd_B_A921_A922NANNANT00.74 IC07
201exd_B_A922_G923AAAAA08510.52 AA08
211exd_B_G923_G924AAAAA08790.24 AA08
221exd_B_G924_C925AAAAA00760.18 AA00
231exd_B_C925_A926AAAAA00750.29 AA00
241exd_B_A926_C927AAAAA00880.25 AA00
251exd_B_C927_C928AAAAA00790.23 AA00
261exd_B_C928_G929AAwAA06870.13 AA06
271exd_B_G929_G930AAAAA08250.37 AA08
281exd_B_G930_A931NANNANT00.56 AA04
291exd_B_A931_U932AAwAA06710.19 AA06
301exd_B_U932_U933AAAAA00370.42 AA00
311exd_B_U933_C934NANNANT00.70 OP29
321exd_B_C934_U935NANNANT00.69 OP16
331exd_B_U935_G936NANNANT01.51 OP17
341exd_B_G936_A937NANNANT00.50 OP11
351exd_B_A937_U938AAAAA08350.48 AA08
361exd_B_U938_U939AAAAA08290.45 AA08
371exd_B_U939_C940AAAAA00260.29 AA00
381exd_B_C940_C941AAwAA11710.31 AA11
391exd_B_C941_G942AAAAA00310.36 AA00
401exd_B_G942_G943AAAAA00600.20 AA00
411exd_B_G943_A944NANNANT00.63 AB02
421exd_B_A944_G945AAwAA11610.35 AA11
431exd_B_G945_G946NANNANT01.08 AA07
441exd_B_G946_U948NANNANT00.82 AA10
451exd_B_U948_C949NANNANT01.35 OP06
461exd_B_C949_G950AAAAA00650.20 AA00
471exd_B_G950_A951AAAAA00880.22 AA00
481exd_B_A951_G952AAwAA10550.25 AA10
491exd_B_G952_G953AAAAA00740.20 AA00
501exd_B_G953_U954AAAAA00640.26 AA00
511exd_B_U954_U955AAAAA00690.29 AA00
521exd_B_U955_C956OPNOP04650.22 OP04
531exd_B_C956_G957AAAAA00470.37 AA00
541exd_B_G957_A958NANNANT00.67 AB04
551exd_B_A958_A959NANNANT00.56 OP04
561exd_B_A959_U960AAwAA06250.61 AA06
571exd_B_U960_C961NANNANT00.37 OP12
581exd_B_C961_C962AAAAA00710.23 AA00
591exd_B_C962_U963AAAAA00780.22 AA00
601exd_B_U963_C964AAAAA00520.27 AA00
611exd_B_C964_G965AAwAA01270.27 AA01
621exd_B_G965_U966AAAAA08700.29 AA08
631exd_B_U966_A967AAAAA00750.15 AA00
641exd_B_A967_C968AAAAA00920.11 AA00
651exd_B_C968_C969AAAAA00850.20 AA00
661exd_B_C969_C970AAAAA00590.24 AA00
671exd_B_C970_C971AAAAA00710.20 AA00
681exd_B_C971_A972NANNANT00.76 AA12
691exd_B_A972_G973NANNANT00.74 OP31
701exd_B_G973_C974NANNANT01.02 OP25
711exd_B_C974_C975NANNANT01.04 OP31
721exd_B_C975_A976AAAAA08710.35 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N