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Conformers: ABBIImiBZICOPNSYNN
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L116A MUTANT OF THE HOMING ENDONUCLEASE I-PPOI COMPLEXED TO HOMING SITE DNA.

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011evw_E_DT2_DG3NANNANT00.39 AB04
021evw_E_DG3_DG4BBBBB00790.17 BB00
031evw_E_DG4_DC5B-ABA10710.33 BA10
041evw_E_DC5_DT6AAAAA00650.28 AA00
051evw_E_DT6_DA7A-BAB05750.25 AB05
061evw_E_DA7_DC8BBBBB00580.33 BB00
071evw_E_DC8_DC9BBBBB00660.33 BB00
081evw_E_DC9_DT10BBBBB00270.48 BB00
091evw_E_DT10_DT11BBwBB02790.25 BB02
101evw_E_DT11_DA12NANNANT00.82 BB08
111evw_E_DA12_DA13NANNANT00.73 BA16
121evw_M_DG14_DA15AAwAA01430.37 AA01
131evw_M_DA15_DG16AAAAA00630.22 AA00
141evw_M_DG16_DA17A-BAB01490.38 AB01
151evw_M_DA17_DG18BBBBB00500.36 BB00
161evw_M_DG18_DT19BBBBB00830.19 BB00
171evw_M_DT19_DC20B-ABA13830.32 BA13
181evw_M_DC20_DA21AAAAA08840.21 AA08
191evw_F_DT1_DG2BBBBB0080.51 BB00
201evw_F_DG2_DA3BBBBB00780.23 BB00
211evw_F_DA3_DC4B-ABA16340.39 BA16
221evw_F_DC4_DT5AAAAA00900.21 AA00
231evw_F_DT5_DC6AAAAA00930.18 AA00
241evw_F_DC6_DT7A-BAB01690.28 AB01
251evw_F_DT7_DC8BBBBB00540.41 BB00
261evw_F_DC8_DT9BBBBB00820.27 BB00
271evw_F_DT9_DT10B-ABA01100.47 BA01
281evw_F_DT10_DA11NANNANT00.65 AB03
291evw_F_DA11_DA12NANNANT00.32 BA13
301evw_O_DG13_DG14A-BAB04680.38 AB04
311evw_O_DG14_DT15NANNANT00.62 AB1S
321evw_O_DT15_DA16SYNBBS1330.56 BBS1
331evw_O_DA16_DG17BBBBB00470.37 BB00
341evw_O_DG17_DC18BBBBB00880.16 BB00
351evw_O_DC18_DC19BBBBB00530.40 BB00
361evw_O_DC19_DA20B12BB04500.21 BB04
371evw_G_DT2_DG3NANNANT00.56 BB10
381evw_G_DG3_DG4BBBBB00830.15 BB00
391evw_G_DG4_DC5B-ABA10690.29 BA10
401evw_G_DC5_DT6AAAAA00490.34 AA00
411evw_G_DT6_DA7A-BAB05890.20 AB05
421evw_G_DA7_DC8BBBBB00400.44 BB00
431evw_G_DC8_DC9BBBBB00310.49 BB00
441evw_G_DC9_DT10BBBBB00790.30 BB00
451evw_G_DT10_DT11BBwBB02680.33 BB02
461evw_G_DT11_DA12NANNANT00.82 BB08
471evw_G_DA12_DA13NANNANT00.83 BA16
481evw_N_DG14_DA15AAwAA01250.40 AA01
491evw_N_DA15_DG16AAAAA08630.32 AA08
501evw_N_DG16_DA17A-BAB05710.25 AB05
511evw_N_DA17_DG18BBBBB00220.47 BB00
521evw_N_DG18_DT19BBBBB00730.25 BB00
531evw_N_DT19_DC20B-ABA16730.21 BA16
541evw_N_DC20_DA21AAAAA08340.25 AA08
551evw_H_DT1_DG2BBwBB16530.56 BB16
561evw_H_DG2_DA3BBBBB00800.27 BB00
571evw_H_DA3_DC4B-ABA13570.31 BA13
581evw_H_DC4_DT5AAAAA00640.25 AA00
591evw_H_DT5_DC6AAAAA00960.13 AA00
601evw_H_DC6_DT7A-BAB05720.33 AB05
611evw_H_DT7_DC8BBBBB00250.47 BB00
621evw_H_DC8_DT9BBBBB00280.43 BB00
631evw_H_DT9_DT10B-ABA01440.32 BA01
641evw_H_DT10_DA11NANNANT00.55 AB05
651evw_H_DA11_DA12B-ABA13310.30 BA13
661evw_P_DG13_DG14A-BAB05510.47 AB05
671evw_P_DG14_DT15NANNANT00.57 AB1S
681evw_P_DT15_DA16SYNBBS1430.51 BBS1
691evw_P_DA16_DG17BBBBB00480.36 BB00
701evw_P_DG17_DC18BBBBB00850.18 BB00
711evw_P_DC18_DC19BBBBB00140.49 BB00
721evw_P_DC19_DA20miBBB10350.38 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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