Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1evp_Q_DC1_DC2 | AAA | AA00 | 10 | 0.22 |
| 02 | 1evp_Q_DC2_DA3 | AAA | AA00 | 55 | 0.16 |
| 03 | 1evp_Q_DA3_DC4 | NAN | NANT | 0 | 0.52 |
| 04 | 1evp_Q_DC4_DT5 | AAA | AA00 | 13 | 0.29 |
| 05 | 1evp_Q_DT5_DA6 | AAA | AA00 | 56 | 0.19 |
| 06 | 1evp_Q_DA6_DG7 | AAA | AA00 | 65 | 0.40 |
| 07 | 1evp_Q_DG7_DT8 | AAA | AA00 | 53 | 0.32 |
| 08 | 1evp_Q_DT8_DG9 | AAA | AA00 | 77 | 0.17 |
| 09 | 1evp_Q_DG9_G10 | AAA | AA00 | 36 | 0.34 |
| 10 | 1evp_R_DC11_DC12 | AAA | AA00 | 62 | 0.46 |
| 11 | 1evp_R_DC12_DA13 | AAA | AA00 | 33 | 0.32 |
| 12 | 1evp_R_DA13_DC14 | AAA | AA00 | 59 | 0.20 |
| 13 | 1evp_R_DC14_DT15 | AAA | AA00 | 28 | 0.33 |
| 14 | 1evp_R_DT15_DA16 | AAw | AA01 | 43 | 0.28 |
| 15 | 1evp_R_DA16_DG17 | AAA | AA00 | 35 | 0.24 |
| 16 | 1evp_R_DG17_DT18 | AAA | AA00 | 67 | 0.23 |
| 17 | 1evp_R_DT18_DG19 | AAA | AA00 | 82 | 0.16 |
| 18 | 1evp_R_DG19_G20 | AAA | AA00 | 72 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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