Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1etf_A_G41_G42 | AAA | AA00 | 57 | 0.29 |
| 02 | 1etf_A_G42_U43 | AAA | AA00 | 71 | 0.25 |
| 03 | 1etf_A_U43_C44 | AAA | AA00 | 67 | 0.22 |
| 04 | 1etf_A_C44_U45 | AAA | AA00 | 68 | 0.29 |
| 05 | 1etf_A_U45_G46 | A-B | AB01 | 46 | 0.35 |
| 06 | 1etf_A_G46_G47 | NAN | NANT | 0 | 0.50 |
| 07 | 1etf_A_G47_G48 | A-B | AB01 | 34 | 0.32 |
| 08 | 1etf_A_G48_C49 | NAN | NANT | 0 | 0.58 |
| 09 | 1etf_A_C49_G50 | AAA | AA00 | 66 | 0.28 |
| 10 | 1etf_A_G50_C51 | AAA | AA00 | 68 | 0.26 |
| 11 | 1etf_A_C51_A52 | AAA | AA00 | 70 | 0.30 |
| 12 | 1etf_A_A52_G53 | AAA | AA00 | 72 | 0.21 |
| 13 | 1etf_A_G53_C54 | AAA | AA00 | 56 | 0.27 |
| 14 | 1etf_A_C54_G55 | AAA | AA00 | 58 | 0.30 |
| 15 | 1etf_A_G55_C56 | NAN | NANT | 0 | 1.25 |
| 16 | 1etf_A_C56_A57 | NAN | NANT | 0 | 0.97 |
| 17 | 1etf_A_A57_A58 | AAA | AA00 | 33 | 0.38 |
| 18 | 1etf_A_A58_G64 | NAN | NANT | 0 | 0.66 |
| 19 | 1etf_A_G64_C65 | AAw | AA01 | 59 | 0.31 |
| 20 | 1etf_A_C65_U66 | AAA | AA00 | 75 | 0.25 |
| 21 | 1etf_A_U66_G67 | AAA | AA00 | 34 | 0.32 |
| 22 | 1etf_A_G67_A68 | NAN | NANT | 0 | 1.30 |
| 23 | 1etf_A_A68_C69 | NAN | NANT | 0 | 2.21 |
| 24 | 1etf_A_C69_G70 | AAA | AA00 | 77 | 0.25 |
| 25 | 1etf_A_G70_G71 | NAN | NANT | 0 | 0.52 |
| 26 | 1etf_A_G71_U72 | NAN | NANT | 0 | 0.60 |
| 27 | 1etf_A_U72_A73 | OPN | OP11 | 52 | 0.33 |
| 28 | 1etf_A_A73_C74 | AAA | AA00 | 36 | 0.37 |
| 29 | 1etf_A_C74_A75 | AAA | AA00 | 75 | 0.27 |
| 30 | 1etf_A_A75_G76 | AAA | AA00 | 71 | 0.24 |
| 31 | 1etf_A_G76_G77 | AAA | AA00 | 61 | 0.28 |
| 32 | 1etf_A_G77_C78 | AAA | AA00 | 68 | 0.22 |
| 33 | 1etf_A_C78_C79 | AAA | AA00 | 59 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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