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Conformers: ABBIImiBZICOPNSYNN
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THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES

Results of the assignment of 320 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011eht-m10_A_G1_G2NANNANT00.46 AA01
0021eht-m1_A_G1_G2NANNANT00.44 AA10
0031eht-m2_A_G1_G2NANNANT00.56 AA06
0041eht-m3_A_G1_G2AAwAA06420.30 AA06
0051eht-m4_A_G1_G2NANNANT00.54 AA06
0061eht-m5_A_G1_G2NANNANT00.43 AA01
0071eht-m6_A_G1_G2NANNANT00.51 AA01
0081eht-m7_A_G1_G2NANNANT00.65 ZZS2
0091eht-m8_A_G1_G2NANNANT00.67 AA11
0101eht-m9_A_G1_G2NANNANT00.72 ZZS2
0111eht-m10_A_G2_C3AAwAA01440.25 AA01
0121eht-m1_A_G2_C3NANNANT01.30 OP24
0131eht-m2_A_G2_C3AAAAA00600.30 AA00
0141eht-m3_A_G2_C3AAAAA00430.39 AA00
0151eht-m4_A_G2_C3AAwAA01430.33 AA01
0161eht-m5_A_G2_C3AAwAA01440.29 AA01
0171eht-m6_A_G2_C3AAwAA01540.23 AA01
0181eht-m7_A_G2_C3AAwAA01330.27 AA01
0191eht-m8_A_G2_C3AAwAA01420.34 AA01
0201eht-m9_A_G2_C3AAwAA01420.31 AA01
0211eht-m10_A_C3_G4NANNANT00.88 AA04
0221eht-m1_A_C3_G4AAAAA00500.31 AA00
0231eht-m2_A_C3_G4AAAAA00680.23 AA00
0241eht-m3_A_C3_G4NANNANT00.61 AA00
0251eht-m4_A_C3_G4NANNANT00.52 AA04
0261eht-m5_A_C3_G4AAAAA00150.38 AA00
0271eht-m6_A_C3_G4NANNANT00.85 AA04
0281eht-m7_A_C3_G4AAAAA00480.27 AA00
0291eht-m8_A_C3_G4NANNANT00.47 AB04
0301eht-m9_A_C3_G4AAAAA00350.29 AA00
0311eht-m10_A_G4_A5AAAAA00410.35 AA00
0321eht-m1_A_G4_A5AAAAA00420.33 AA00
0331eht-m2_A_G4_A5AAAAA00440.23 AA00
0341eht-m3_A_G4_A5AAAAA00470.35 AA00
0351eht-m4_A_G4_A5NANNANT00.68 AB02
0361eht-m5_A_G4_A5AAAAA00530.28 AA00
0371eht-m6_A_G4_A5AAAAA00360.34 AA00
0381eht-m7_A_G4_A5AAAAA00120.41 AA00
0391eht-m8_A_G4_A5AAAAA00430.21 AA00
0401eht-m9_A_G4_A5AAAAA00160.48 AA00
0411eht-m10_A_A5_U6AAwAA01420.28 AA01
0421eht-m1_A_A5_U6AAwAA01310.40 AA01
0431eht-m2_A_A5_U6AAwAA01470.36 AA01
0441eht-m3_A_A5_U6AAwAA01380.36 AA01
0451eht-m4_A_A5_U6AAwAA01170.32 AA01
0461eht-m5_A_A5_U6AAAAA00150.46 AA00
0471eht-m6_A_A5_U6AAwAA01460.27 AA01
0481eht-m7_A_A5_U6AAwAA01510.31 AA01
0491eht-m8_A_A5_U6AAwAA01630.25 AA01
0501eht-m9_A_A5_U6AAAAA00280.42 AA00
0511eht-m10_A_U6_A7ICLIC01490.57 IC01
0521eht-m1_A_U6_A7NANNANT01.23 IC07
0531eht-m2_A_U6_A7NANNANT00.47 IC01
0541eht-m3_A_U6_A7NANNANT00.77 IC04
0551eht-m4_A_U6_A7ICLIC01500.51 IC01
0561eht-m5_A_U6_A7ICLIC03450.34 IC03
0571eht-m6_A_U6_A7ICLIC01580.49 IC01
0581eht-m7_A_U6_A7ICLIC01370.57 IC01
0591eht-m8_A_U6_A7NANNANT00.55 IC03
0601eht-m9_A_U6_A7NANNANT00.47 IC04
0611eht-m10_A_A7_C8NANNANT00.48 OP15
0621eht-m1_A_A7_C8NANNANT00.44 OP26
0631eht-m2_A_A7_C8NANNANT00.33 OP26
0641eht-m3_A_A7_C8NANNANT00.33 OP26
0651eht-m4_A_A7_C8NANNANT00.34 OP26
0661eht-m5_A_A7_C8NANNANT01.23 BA16
0671eht-m6_A_A7_C8NANNANT00.55 OP15
0681eht-m7_A_A7_C8NANNANT00.42 OP26
0691eht-m8_A_A7_C8NANNANT00.48 OP26
0701eht-m9_A_A7_C8NANNANT00.46 OP26
0711eht-m10_A_C8_C9AAAAA08200.46 AA08
0721eht-m1_A_C8_C9AAwAA05300.50 AA05
0731eht-m2_A_C8_C9AAAAA08360.45 AA08
0741eht-m3_A_C8_C9AAAAA08470.36 AA08
0751eht-m4_A_C8_C9AAAAA08300.38 AA08
0761eht-m5_A_C8_C9AAAAA08290.42 AA08
0771eht-m6_A_C8_C9AAwAA11330.46 AA11
0781eht-m7_A_C8_C9NANNANT00.65 AA10
0791eht-m8_A_C8_C9AAwAA01380.39 AA01
0801eht-m9_A_C8_C9AAwAA01200.44 AA01
0811eht-m10_A_C9_A10NANNANT00.71 AA10
0821eht-m1_A_C9_A10NANNANT00.65 AA10
0831eht-m2_A_C9_A10NANNANT00.70 AA10
0841eht-m3_A_C9_A10AAwAA11380.39 AA11
0851eht-m4_A_C9_A10NANNANT00.77 AA10
0861eht-m5_A_C9_A10NANNANT00.61 AA10
0871eht-m6_A_C9_A10NANNANT00.65 AA01
0881eht-m7_A_C9_A10NANNANT00.65 AA10
0891eht-m8_A_C9_A10NANNANT00.61 AA11
0901eht-m9_A_C9_A10NANNANT00.60 AA01
0911eht-m10_A_A10_G11AAAAA00280.39 AA00
0921eht-m1_A_A10_G11AAAAA00180.35 AA00
0931eht-m2_A_A10_G11NANNANT00.58 AB04
0941eht-m3_A_A10_G11NANNANT00.38 AB04
0951eht-m4_A_A10_G11AAAAA00190.39 AA00
0961eht-m5_A_A10_G11NANNANT00.81 AA04
0971eht-m6_A_A10_G11AAAAA08260.47 AA08
0981eht-m7_A_A10_G11AAAAA08100.54 AA08
0991eht-m8_A_A10_G11AAAAA00270.35 AA00
1001eht-m9_A_A10_G11NANNANT00.51 AA01
1011eht-m10_A_G11_C12AAAAA00590.25 AA00
1021eht-m1_A_G11_C12AAAAA00740.21 AA00
1031eht-m2_A_G11_C12AAwAA01470.34 AA01
1041eht-m3_A_G11_C12AAwAA01420.31 AA01
1051eht-m4_A_G11_C12AAAAA00630.24 AA00
1061eht-m5_A_G11_C12AAwAA01270.24 AA01
1071eht-m6_A_G11_C12AAAAA00490.28 AA00
1081eht-m7_A_G11_C12AAAAA00630.29 AA00
1091eht-m8_A_G11_C12AAAAA00760.25 AA00
1101eht-m9_A_G11_C12AAAAA00530.27 AA00
1111eht-m10_A_C12_C13AAwAA01440.36 AA01
1121eht-m1_A_C12_C13AAAAA00340.28 AA00
1131eht-m2_A_C12_C13AAAAA00640.19 AA00
1141eht-m3_A_C12_C13AAAAA00750.20 AA00
1151eht-m4_A_C12_C13AAwAA01300.41 AA01
1161eht-m5_A_C12_C13AAwAA01580.30 AA01
1171eht-m6_A_C12_C13AAAAA00510.30 AA00
1181eht-m7_A_C12_C13AAwAA01350.39 AA01
1191eht-m8_A_C12_C13AAAAA00550.29 AA00
1201eht-m9_A_C12_C13AAwAA01290.26 AA01
1211eht-m10_A_C13_G14AAAAA00260.45 AA00
1221eht-m1_A_C13_G14NANNANT00.46 AB04
1231eht-m2_A_C13_G14NANNANT00.82 AA04
1241eht-m3_A_C13_G14NANNANT00.47 AB04
1251eht-m4_A_C13_G14AAAAA00240.48 AA00
1261eht-m5_A_C13_G14AAAAA00290.47 AA00
1271eht-m6_A_C13_G14AAAAA00130.52 AA00
1281eht-m7_A_C13_G14NANNANT00.72 AA03
1291eht-m8_A_C13_G14AAAAA00360.43 AA00
1301eht-m9_A_C13_G14NANNANT00.47 AB04
1311eht-m10_A_G14_A15NANNANT00.69 OP04
1321eht-m1_A_G14_A15NANNANT00.34 OP04
1331eht-m2_A_G14_A15NANNANT00.35 OP04
1341eht-m3_A_G14_A15NANNANT00.31 OP04
1351eht-m4_A_G14_A15NANNANT00.70 OP04
1361eht-m5_A_G14_A15NANNANT00.69 OP03
1371eht-m6_A_G14_A15NANNANT00.62 OP04
1381eht-m7_A_G14_A15NANNANT00.66 OP04
1391eht-m8_A_G14_A15NANNANT00.38 OP04
1401eht-m9_A_G14_A15NANNANT00.32 OP04
1411eht-m10_A_A15_A16AAwAA05150.63 AA05
1421eht-m1_A_A15_A16AAAAA00130.50 AA00
1431eht-m2_A_A15_A16AAAAA0070.45 AA00
1441eht-m3_A_A15_A16AAAAA02130.36 AA02
1451eht-m4_A_A15_A16AAAAA09100.35 AA09
1461eht-m5_A_A15_A16AAwAA05100.61 AA05
1471eht-m6_A_A15_A16AAwAA05140.60 AA05
1481eht-m7_A_A15_A16AAAAA00410.31 AA00
1491eht-m8_A_A15_A16AAwAA05170.55 AA05
1501eht-m9_A_A15_A16AAAAA00100.45 AA00
1511eht-m10_A_A16_A17AAAAA0090.55 AA00
1521eht-m1_A_A16_A17AAAAA00210.49 AA00
1531eht-m2_A_A16_A17AAwAA01150.41 AA01
1541eht-m3_A_A16_A17AAwAA01110.38 AA01
1551eht-m4_A_A16_A17AAwAA01190.41 AA01
1561eht-m5_A_A16_A17AAAAA04390.56 AA04
1571eht-m6_A_A16_A17AAAAA04400.55 AA04
1581eht-m7_A_A16_A17AAAAA00260.43 AA00
1591eht-m8_A_A16_A17AAAAA00360.43 AA00
1601eht-m9_A_A16_A17AAwAA01210.40 AA01
1611eht-m10_A_A17_G18NANNANT00.83 AA04
1621eht-m1_A_A17_G18AAwAA01470.35 AA01
1631eht-m2_A_A17_G18AAAAA04210.69 AA04
1641eht-m3_A_A17_G18AAwAA05390.37 AA05
1651eht-m4_A_A17_G18NANNANT00.88 AA00
1661eht-m5_A_A17_G18NANNANT00.86 AA04
1671eht-m6_A_A17_G18NANNANT00.87 AA04
1681eht-m7_A_A17_G18AAwAA05550.27 AA05
1691eht-m8_A_A17_G18AAwAA05560.24 AA05
1701eht-m9_A_A17_G18AAAAA04350.56 AA04
1711eht-m10_A_G18_G19AAwAA01290.29 AA01
1721eht-m1_A_G18_G19AAAAA00690.25 AA00
1731eht-m2_A_G18_G19AAAAA00820.18 AA00
1741eht-m3_A_G18_G19AAAAA00330.31 AA00
1751eht-m4_A_G18_G19AAAAA00660.23 AA00
1761eht-m5_A_G18_G19AAAAA00660.18 AA00
1771eht-m6_A_G18_G19AAwAA01190.28 AA01
1781eht-m7_A_G18_G19AAAAA00660.24 AA00
1791eht-m8_A_G18_G19AAAAA00780.18 AA00
1801eht-m9_A_G18_G19AAAAA00760.16 AA00
1811eht-m10_A_G19_C20AAAAA00590.34 AA00
1821eht-m1_A_G19_C20AAAAA00690.18 AA00
1831eht-m2_A_G19_C20AAAAA00740.23 AA00
1841eht-m3_A_G19_C20AAAAA04760.26 AA04
1851eht-m4_A_G19_C20AAAAA00620.25 AA00
1861eht-m5_A_G19_C20AAwAA01210.46 AA01
1871eht-m6_A_G19_C20AAwAA06190.30 AA06
1881eht-m7_A_G19_C20AAAAA04710.26 AA04
1891eht-m8_A_G19_C20AAAAA00470.24 AA00
1901eht-m9_A_G19_C20AAAAA00600.20 AA00
1911eht-m10_A_C20_C21AAAAA00390.40 AA00
1921eht-m1_A_C20_C21AAAAA00630.23 AA00
1931eht-m2_A_C20_C21AAAAA00180.52 AA00
1941eht-m3_A_C20_C21AAAAA00170.50 AA00
1951eht-m4_A_C20_C21AAAAA00320.30 AA00
1961eht-m5_A_C20_C21AAAAA04370.56 AA04
1971eht-m6_A_C20_C21AAAAA00130.50 AA00
1981eht-m7_A_C20_C21AAAAA04260.68 AA04
1991eht-m8_A_C20_C21AAAAA08180.45 AA08
2001eht-m9_A_C20_C21AAAAA0470.50 AA04
2011eht-m10_A_C21_C22NANNANT00.62 IC04
2021eht-m1_A_C21_C22NANNANT02.02 OP22
2031eht-m2_A_C21_C22NANNANT01.51 OP31
2041eht-m3_A_C21_C22NANNANT01.03 IC04
2051eht-m4_A_C21_C22NANNANT01.30 OP31
2061eht-m5_A_C21_C22NANNANT01.47 OP19
2071eht-m6_A_C21_C22NANNANT01.07 OP31
2081eht-m7_A_C21_C22NANNANT01.10 OP31
2091eht-m8_A_C21_C22NANNANT01.10 IC07
2101eht-m9_A_C21_C22NANNANT01.13 OP31
2111eht-m10_A_C22_U23NANNANT00.91 BB12
2121eht-m1_A_C22_U23NANNANT01.12 BB08
2131eht-m2_A_C22_U23NANNANT00.93 BB08
2141eht-m3_A_C22_U23NANNANT00.92 BB08
2151eht-m4_A_C22_U23NANNANT00.72 BB07
2161eht-m5_A_C22_U23NANNANT00.89 BB08
2171eht-m6_A_C22_U23NANNANT00.92 BB08
2181eht-m7_A_C22_U23NANNANT00.82 BB07
2191eht-m8_A_C22_U23NANNANT00.64 BB07
2201eht-m9_A_C22_U23BB2BB07250.76 BB07
2211eht-m10_A_U23_U24NANNANT00.59 OP24
2221eht-m1_A_U23_U24NANNANT00.80 BB12
2231eht-m2_A_U23_U24NANNANT00.61 OP24
2241eht-m3_A_U23_U24NANNANT00.60 OP24
2251eht-m4_A_U23_U24NANNANT00.56 OP24
2261eht-m5_A_U23_U24NANNANT01.29 BB08
2271eht-m6_A_U23_U24NANNANT00.66 OP23
2281eht-m7_A_U23_U24NANNANT00.86 OP23
2291eht-m8_A_U23_U24NANNANT00.95 OP23
2301eht-m9_A_U23_U24NANNANT00.83 OP23
2311eht-m10_A_U24_G25NANNANT01.36 OP04
2321eht-m1_A_U24_G25NANNANT01.31 OP04
2331eht-m2_A_U24_G25NANNANT01.29 OP04
2341eht-m3_A_U24_G25NANNANT01.46 OP04
2351eht-m4_A_U24_G25NANNANT01.25 OP04
2361eht-m5_A_U24_G25NANNANT01.30 OP04
2371eht-m6_A_U24_G25NANNANT01.16 OP04
2381eht-m7_A_U24_G25NANNANT01.28 OP04
2391eht-m8_A_U24_G25NANNANT01.34 OP04
2401eht-m9_A_U24_G25NANNANT01.38 OP04
2411eht-m10_A_G25_G26NANNANT00.66 AB04
2421eht-m1_A_G25_G26NANNANT00.95 IC04
2431eht-m2_A_G25_G26A-BAB04590.36 AB04
2441eht-m3_A_G25_G26NANNANT00.40 AB04
2451eht-m4_A_G25_G26NANNANT00.78 IC04
2461eht-m5_A_G25_G26A-BAB04390.35 AB04
2471eht-m6_A_G25_G26NANNANT00.59 AB04
2481eht-m7_A_G25_G26NANNANT01.04 ZZ01
2491eht-m8_A_G25_G26A-BAB04530.36 AB04
2501eht-m9_A_G25_G26NANNANT00.35 AB04
2511eht-m10_A_G26_C27NANNANT01.84 OP02
2521eht-m1_A_G26_C27NANNANT02.12 BB11
2531eht-m2_A_G26_C27NANNANT01.42 OP17
2541eht-m3_A_G26_C27NANNANT00.86 OP14
2551eht-m4_A_G26_C27NANNANT01.59 OP14
2561eht-m5_A_G26_C27NANNANT00.74 OP17
2571eht-m6_A_G26_C27NANNANT00.71 OP17
2581eht-m7_A_G26_C27NANNANT00.53 OP17
2591eht-m8_A_G26_C27NANNANT00.89 OP05
2601eht-m9_A_G26_C27NANNANT01.44 BB15
2611eht-m10_A_C27_A28NANNANT01.51 OP04
2621eht-m1_A_C27_A28NANNANT01.07 OP06
2631eht-m2_A_C27_A28NANNANT01.79 OP04
2641eht-m3_A_C27_A28NANNANT01.68 OP03
2651eht-m4_A_C27_A28NANNANT02.09 OP27
2661eht-m5_A_C27_A28NANNANT02.44 OPS1
2671eht-m6_A_C27_A28NANNANT01.24 OP13
2681eht-m7_A_C27_A28NANNANT00.96 OP05
2691eht-m8_A_C27_A28NANNANT00.74 OP17
2701eht-m9_A_C27_A28NANNANT01.35 BA16
2711eht-m10_A_A28_G29AAwAA05250.31 AA05
2721eht-m1_A_A28_G29AAwAA11140.43 AA11
2731eht-m2_A_A28_G29AAAAA08230.53 AA08
2741eht-m3_A_A28_G29AAwAA01160.40 AA01
2751eht-m4_A_A28_G29AAwAA06300.55 AA06
2761eht-m5_A_A28_G29AAwAA06250.50 AA06
2771eht-m6_A_A28_G29AAAAA00140.51 AA00
2781eht-m7_A_A28_G29AAwAA06220.60 AA06
2791eht-m8_A_A28_G29AAAAA08130.56 AA08
2801eht-m9_A_A28_G29NANNANT00.53 AA08
2811eht-m10_A_G29_C30AAAAA00510.29 AA00
2821eht-m1_A_G29_C30NANNANT00.63 AA05
2831eht-m2_A_G29_C30NANNANT00.56 AA06
2841eht-m3_A_G29_C30NANNANT00.55 AA05
2851eht-m4_A_G29_C30AAwAA06420.39 AA06
2861eht-m5_A_G29_C30NANNANT00.55 AA11
2871eht-m6_A_G29_C30NANNANT00.56 AA01
2881eht-m7_A_G29_C30NANNANT00.55 AA05
2891eht-m8_A_G29_C30NANNANT00.56 AA05
2901eht-m9_A_G29_C30AAAAA04190.72 AA04
2911eht-m10_A_C30_G31NANNANT00.42 AA06
2921eht-m1_A_C30_G31AAuAA12110.51 AA12
2931eht-m2_A_C30_G31NANNANT00.71 AB02
2941eht-m3_A_C30_G31NANNANT00.38 AA01
2951eht-m4_A_C30_G31NANNANT00.69 AA12
2961eht-m5_A_C30_G31NANNANT00.62 AA12
2971eht-m6_A_C30_G31AAwAA01520.25 AA01
2981eht-m7_A_C30_G31NANNANT00.89 AA04
2991eht-m8_A_C30_G31NANNANT00.57 AA01
3001eht-m9_A_C30_G31NANNANT00.61 AB04
3011eht-m10_A_G31_U32AAAAA00470.39 AA00
3021eht-m1_A_G31_U32AAAAA00380.37 AA00
3031eht-m2_A_G31_U32AAAAA00380.39 AA00
3041eht-m3_A_G31_U32AAAAA00610.33 AA00
3051eht-m4_A_G31_U32AAAAA00400.39 AA00
3061eht-m5_A_G31_U32AAAAA00370.41 AA00
3071eht-m6_A_G31_U32AAAAA00430.40 AA00
3081eht-m7_A_G31_U32AAwAA01550.24 AA01
3091eht-m8_A_G31_U32AAAAA00550.35 AA00
3101eht-m9_A_G31_U32AAwAA01500.28 AA01
3111eht-m10_A_U32_C33NANNANT00.49 AA11
3121eht-m1_A_U32_C33AAwAA06420.47 AA06
3131eht-m2_A_U32_C33AAAAA00420.38 AA00
3141eht-m3_A_U32_C33AAAAA00270.41 AA00
3151eht-m4_A_U32_C33AAAAA00260.46 AA00
3161eht-m5_A_U32_C33AAAAA00310.43 AA00
3171eht-m6_A_U32_C33AAAAA00280.38 AA00
3181eht-m7_A_U32_C33AAAAA00650.25 AA00
3191eht-m8_A_U32_C33AAAAA00280.42 AA00
3201eht-m9_A_U32_C33AAAAA00550.30 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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