DNATCO v4.1: results

Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli

Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	1efw_C_G1_G2	AAA	AA00	41	0.28	AA00
002	1efw_C_G2_A3	AAA	AA00	49	0.30	AA00
003	1efw_C_A3_G4	AAA	AA08	58	0.39	AA08
004	1efw_C_G4_C5	AAA	AA08	71	0.29	AA08
005	1efw_C_C5_G6	AAA	AA08	69	0.19	AA08
006	1efw_C_G6_G7	A-B	AB05	13	0.24	AB05
007	1efw_C_G7_4SU8	NAN	NANT	0	0.35	OP11
008	1efw_C_4SU8_A9	NAN	NANT	0	1.21	IC04
009	1efw_C_A9_G10	NAN	NANT	0	1.18	OP12
010	1efw_C_G10_U11	AAA	AA04	19	0.51	AA04
011	1efw_C_U11_U12	AAA	AA00	30	0.33	AA00
012	1efw_C_U12_C13	AAA	AA00	29	0.51	AA00
013	1efw_C_C13_A14	AAA	AA00	70	0.28	AA00
014	1efw_C_A14_G15	AAA	AA04	64	0.40	AA04
015	1efw_C_G15_H2U16	NAN	NANT	0	0.63	OP01
016	1efw_C_H2U16_C17	NAN	NANT	0	1.72	ZZS1
017	1efw_C_C17_G18	NAN	NANT	0	1.10	OP13
018	1efw_C_G18_G19	NAN	NANT	0	1.14	OP22
019	1efw_C_G19_H2U20	NAN	NANT	0	1.35	OP17
020	1efw_C_H2U20.A_A21	NAN	NANT	0	0.92	OP14
021	1efw_C_H2U20_H2U20.A	NAN	NANT	0	1.44	OP21
022	1efw_C_A21_G22	AAu	AA12	48	0.72	AA12
023	1efw_C_G22_A23	NAN	NANT	0	0.36	AA04
024	1efw_C_A23_A24	AAA	AA08	79	0.28	AA08
025	1efw_C_A24_U25	AAA	AA08	57	0.30	AA08
026	1efw_C_U25_A26	AAA	AA00	80	0.19	AA00
027	1efw_C_A26_C27	AAA	AA00	90	0.19	AA00
028	1efw_C_C27_C28	AAA	AA00	85	0.16	AA00
029	1efw_C_C28_U29	AAA	AA00	83	0.11	AA00
030	1efw_C_U29_G30	AAA	AA00	18	0.27	AA00
031	1efw_C_G30_C31	AAA	AA00	81	0.17	AA00
032	1efw_C_C31_C32	AAA	AA00	69	0.23	AA00
033	1efw_C_C32_U33	NAN	NANT	0	0.83	OP29
034	1efw_C_U33_QUO34	NAN	NANT	0	0.86	OP22
035	1efw_C_QUO34_U35	NAN	NANT	0	0.53	OP22
036	1efw_C_U35_C36	AAA	AA00	27	0.47	AA00
037	1efw_C_C36_2MA37	NAN	NANT	0	0.60	OP21
038	1efw_C_2MA37_C38	NAN	NANT	0	0.58	OP17
039	1efw_C_C38_G39	AAA	AA00	49	0.43	AA00
040	1efw_C_G39_C40	AAA	AA00	78	0.15	AA00
041	1efw_C_C40_A41	AAA	AA00	90	0.15	AA00
042	1efw_C_A41_G42	AAA	AA00	73	0.15	AA00
043	1efw_C_G42_G43	AAA	AA00	76	0.29	AA00
044	1efw_C_G43_G44	AAA	AA08	72	0.23	AA08
045	1efw_C_G44_G45	AAA	AA00	62	0.35	AA00
046	1efw_C_G45_G7M46	ICL	IC01	69	0.24	IC01
047	1efw_C_G7M46_U47	NAN	NANT	0	0.78	OP13
048	1efw_C_U47_C48	NAN	NANT	0	1.56	OP06
049	1efw_C_C48_G49	NAN	NANT	0	1.81	OP14
050	1efw_C_G49_C50	AAA	AA00	57	0.16	AA00
051	1efw_C_C50_G51	AAA	AA00	70	0.23	AA00
052	1efw_C_G51_G52	AAA	AA00	37	0.29	AA00
053	1efw_C_G52_G53	AAA	AA00	66	0.39	AA00
054	1efw_C_G53_5MU54	AAA	AA00	58	0.22	AA00
055	1efw_C_C56_G57	AAA	AA00	67	0.33	AA00
056	1efw_C_G57_A58	ICL	IC01	69	0.33	IC01
057	1efw_C_A58_G59	OPN	OP25	84	0.17	OP25
058	1efw_C_G59_U60	A-B	AB05	53	0.44	AB05
059	1efw_C_U60_C61	OPN	OP12	81	0.20	OP12
060	1efw_C_C61_C62	AAA	AA00	43	0.31	AA00
061	1efw_C_C62_C63	AAA	AA00	89	0.18	AA00
062	1efw_C_C63_G64	AAA	AA00	79	0.16	AA00
063	1efw_C_C66_C67	AAA	AA00	75	0.17	AA00
064	1efw_C_C67_G68	AAA	AA00	89	0.21	AA00
065	1efw_C_G68_U69	AAA	AA00	40	0.31	AA00
066	1efw_C_U69_U70	AAA	AA00	13	0.36	AA00
067	1efw_C_U70_C71	AAA	AA00	10	0.49	AA00
068	1efw_C_C71_C72	AAA	AA00	31	0.25	AA00
069	1efw_D_G1_G2	AAA	AA08	38	0.61	AA08
070	1efw_D_G2_A3	AAA	AA04	80	0.25	AA04
071	1efw_D_A3_G4	AAA	AA00	66	0.26	AA00
072	1efw_D_G4_C5	AAA	AA08	71	0.36	AA08
073	1efw_D_C5_G6	AAA	AA00	43	0.34	AA00
074	1efw_D_G6_G7	A-B	AB05	47	0.31	AB05
075	1efw_D_G7_4SU8	OPN	OP11	72	0.43	OP11
076	1efw_D_4SU8_A9	NAN	NANT	0	1.20	IC04
077	1efw_D_A9_G10	NAN	NANT	0	1.15	OP12
078	1efw_D_G10_U11	AAA	AA04	66	0.33	AA04
079	1efw_D_U11_U12	AAA	AA00	81	0.15	AA00
080	1efw_D_U12_C13	AAA	AA08	39	0.42	AA08
081	1efw_D_C13_A14	AAu	AA12	73	0.38	AA12
082	1efw_D_A14_G15	AAA	AA04	53	0.42	AA04
083	1efw_D_G15_H2U16	NAN	NANT	0	0.69	OP01
084	1efw_D_H2U16_C17	NAN	NANT	0	1.66	OP21
085	1efw_D_C17_G18	NAN	NANT	0	1.50	OP13
086	1efw_D_G18_G19	ICL	IC05	41	0.26	IC05
087	1efw_D_G19_H2U20	NAN	NANT	0	1.72	OP13
088	1efw_D_H2U20.A_A21	NAN	NANT	0	0.89	OP13
089	1efw_D_H2U20_H2U20.A	NAN	NANT	0	1.75	OP21
090	1efw_D_A21_G22	NAN	NANT	0	0.93	AA11
091	1efw_D_G22_A23	AAA	AA00	53	0.30	AA00
092	1efw_D_A23_A24	AAA	AA00	75	0.25	AA00
093	1efw_D_A24_U25	AAA	AA08	71	0.24	AA08
094	1efw_D_U25_A26	AAA	AA00	83	0.16	AA00
095	1efw_D_A26_C27	AAA	AA00	77	0.21	AA00
096	1efw_D_C27_C28	AAA	AA00	44	0.27	AA00
097	1efw_D_C28_U29	AAA	AA00	80	0.18	AA00
098	1efw_D_U29_G30	AAA	AA00	24	0.26	AA00
099	1efw_D_G30_C31	AAA	AA00	36	0.19	AA00
100	1efw_D_C31_C32	AAA	AA00	59	0.33	AA00
101	1efw_D_C32_U33	NAN	NANT	0	0.86	OP29
102	1efw_D_U33_QUO34	NAN	NANT	0	0.84	OP22
103	1efw_D_QUO34_U35	NAN	NANT	0	0.57	OP22
104	1efw_D_U35_C36	AAA	AA00	13	0.54	AA00
105	1efw_D_C36_2MA37	NAN	NANT	0	2.22	IC02
106	1efw_D_2MA37_C38	NAN	NANT	0	0.59	OP17
107	1efw_D_C38_G39	AAA	AA00	59	0.40	AA00
108	1efw_D_G39_C40	AAA	AA00	81	0.18	AA00
109	1efw_D_C40_A41	AAA	AA00	71	0.19	AA00
110	1efw_D_A41_G42	AAA	AA08	70	0.29	AA08
111	1efw_D_G42_G43	AAA	AA08	60	0.28	AA08
112	1efw_D_G43_G44	AAA	AA00	49	0.25	AA00
113	1efw_D_G44_G45	AAA	AA00	66	0.35	AA00
114	1efw_D_G45_G7M46	NAN	NANT	0	0.47	IC02
115	1efw_D_G7M46_U47	NAN	NANT	0	1.17	OP18
116	1efw_D_U47_C48	NAN	NANT	0	1.73	OP01
117	1efw_D_C48_G49	NAN	NANT	0	1.62	OP13
118	1efw_D_G49_C50	AAA	AA00	68	0.19	AA00
119	1efw_D_C50_G51	AAA	AA00	68	0.29	AA00
120	1efw_D_G51_G52	AAA	AA00	62	0.23	AA00
121	1efw_D_G52_G53	AAA	AA04	63	0.41	AA04
122	1efw_D_G53_5MU54	AAA	AA08	65	0.21	AA08
123	1efw_D_C56_G57	AAA	AA08	91	0.20	AA08
124	1efw_D_G57_A58	ICL	IC01	84	0.38	IC01
125	1efw_D_A58_G59	OPN	OP25	67	0.25	OP25
126	1efw_D_G59_U60	A-B	AB05	72	0.38	AB05
127	1efw_D_U60_C61	OPN	OP12	74	0.17	OP12
128	1efw_D_C61_C62	AAA	AA00	63	0.20	AA00
129	1efw_D_C62_C63	AAA	AA00	85	0.20	AA00
130	1efw_D_C63_G64	AAA	AA00	74	0.19	AA00
131	1efw_D_C66_C67	AAA	AA08	83	0.20	AA08
132	1efw_D_C67_G68	AAA	AA04	70	0.41	AA04
133	1efw_D_G68_U69	AAA	AA08	56	0.36	AA08
134	1efw_D_U69_U70	AAA	AA08	51	0.53	AA08
135	1efw_D_U70_C71	AAu	AA12	27	0.33	AA12
136	1efw_D_C71_C72	AAA	AA08	27	0.51	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible