Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1ec6_C_G1_A2 | AAA | AA00 | 82 | 0.11 |
| 02 | 1ec6_C_A2_G3 | AAw | AA01 | 86 | 0.26 |
| 03 | 1ec6_C_G3_G4 | AAA | AA08 | 71 | 0.32 |
| 04 | 1ec6_C_G4_A5 | AAA | AA00 | 84 | 0.14 |
| 05 | 1ec6_C_A5_C6 | AAA | AA00 | 44 | 0.20 |
| 06 | 1ec6_C_C6_C7 | NAN | NANT | 0 | 0.79 |
| 07 | 1ec6_C_C7_U8 | OPN | OP09 | 13 | 0.25 |
| 08 | 1ec6_C_U8_A9 | NAN | NANT | 0 | 0.64 |
| 09 | 1ec6_C_A9_G10 | NAN | NANT | 0 | 1.89 |
| 10 | 1ec6_C_G10_A11 | NAN | NANT | 0 | 1.21 |
| 11 | 1ec6_C_A11_U12 | NAN | NANT | 0 | 0.77 |
| 12 | 1ec6_C_U12_C13 | NAN | NANT | 0 | 1.85 |
| 13 | 1ec6_C_C13_A14 | NAN | NANT | 0 | 0.41 |
| 14 | 1ec6_C_A14_C15 | AAA | AA00 | 48 | 0.42 |
| 15 | 1ec6_C_C15_C16 | AAA | AA00 | 47 | 0.41 |
| 16 | 1ec6_C_C16_C17 | AAA | AA00 | 74 | 0.35 |
| 17 | 1ec6_C_C17_C18 | AAA | AA00 | 87 | 0.19 |
| 18 | 1ec6_C_C18_U19 | AAA | AA00 | 71 | 0.27 |
| 19 | 1ec6_C_U19_C20 | AAw | AA01 | 59 | 0.27 |
| 20 | 1ec6_D_G1_A2 | AAA | AA00 | 96 | 0.11 |
| 21 | 1ec6_D_A2_G3 | AAw | AA01 | 78 | 0.29 |
| 22 | 1ec6_D_G3_G4 | AAA | AA08 | 83 | 0.33 |
| 23 | 1ec6_D_G4_A5 | AAA | AA00 | 83 | 0.24 |
| 24 | 1ec6_D_A5_C6 | AAA | AA00 | 32 | 0.37 |
| 25 | 1ec6_D_C6_C7 | AAw | AA01 | 47 | 0.42 |
| 26 | 1ec6_D_C7_U8 | NAN | NANT | 0 | 0.89 |
| 27 | 1ec6_D_U8_A9 | NAN | NANT | 0 | 0.79 |
| 28 | 1ec6_D_A9_G10 | AAw | AA01 | 54 | 0.30 |
| 29 | 1ec6_D_G10_A11 | NAN | NANT | 0 | 1.36 |
| 30 | 1ec6_D_A11_U12 | NAN | NANT | 0 | 0.80 |
| 31 | 1ec6_D_U12_C13 | NAN | NANT | 0 | 2.16 |
| 32 | 1ec6_D_C13_A14 | NAN | NANT | 0 | 0.92 |
| 33 | 1ec6_D_A14_C15 | AAA | AA00 | 41 | 0.43 |
| 34 | 1ec6_D_C15_C16 | AAA | AA00 | 49 | 0.42 |
| 35 | 1ec6_D_C16_C17 | AAA | AA00 | 69 | 0.32 |
| 36 | 1ec6_D_C17_C18 | AAA | AA00 | 77 | 0.20 |
| 37 | 1ec6_D_C18_U19 | AAA | AA00 | 89 | 0.15 |
| 38 | 1ec6_D_U19_C20 | AAA | AA00 | 70 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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