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Conformers: ABBIImiBZICOPNSYNN
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STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES

Results of the assignment of 145 detected steps in 5 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011ebr-m1_A_G1_G2AAAAA00860.15 AA00
0021ebr-m2_A_G1_G2AAAAA00880.15 AA00
0031ebr-m3_A_G1_G2AAAAA00830.17 AA00
0041ebr-m4_A_G1_G2AAAAA00830.17 AA00
0051ebr-m5_A_G1_G2AAAAA00830.16 AA00
0061ebr-m1_A_G2_U3AAAAA00810.15 AA00
0071ebr-m2_A_G2_U3AAAAA00790.18 AA00
0081ebr-m3_A_G2_U3AAAAA00830.15 AA00
0091ebr-m4_A_G2_U3AAAAA00790.15 AA00
0101ebr-m5_A_G2_U3AAAAA00830.14 AA00
0111ebr-m1_A_U3_G4AAAAA00790.17 AA00
0121ebr-m2_A_U3_G4AAAAA00810.14 AA00
0131ebr-m3_A_U3_G4AAAAA00850.15 AA00
0141ebr-m4_A_U3_G4AAAAA00800.15 AA00
0151ebr-m5_A_U3_G4AAAAA00850.14 AA00
0161ebr-m1_A_G4_G5A-BAB01720.31 AB01
0171ebr-m2_A_G4_G5NANNANT00.93 BB02
0181ebr-m3_A_G4_G5NANNANT00.67 AB02
0191ebr-m4_A_G4_G5NANNANT01.02 IC03
0201ebr-m5_A_G4_G5NANNANT00.63 AB02
0211ebr-m1_A_G5_G6B-ABA08640.30 BA08
0221ebr-m2_A_G5_G6B-ABA08570.30 BA08
0231ebr-m3_A_G5_G6NANNANT00.64 BA16
0241ebr-m4_A_G5_G6NANNANT00.69 BA13
0251ebr-m5_A_G5_G6NANNANT00.50 BA13
0261ebr-m1_A_G6_C7NANNANT00.55 AA09
0271ebr-m2_A_G6_C7NANNANT00.56 AA09
0281ebr-m3_A_G6_C7NANNANT00.37 BB16
0291ebr-m4_A_G6_C7NANNANT00.57 AA04
0301ebr-m5_A_G6_C7NANNANT00.84 AA09
0311ebr-m1_A_C7_G8AAAAA02160.36 AA02
0321ebr-m2_A_C7_G8AAAAA02320.35 AA02
0331ebr-m3_A_C7_G8BBBBB01190.54 BB01
0341ebr-m4_A_C7_G8NANNANT00.51 AB04
0351ebr-m5_A_C7_G8AAAAA02570.31 AA02
0361ebr-m1_A_G8_C9AAAAA04160.71 AA04
0371ebr-m2_A_G8_C9AAAAA04190.64 AA04
0381ebr-m3_A_G8_C9NANNANT00.57 BA08
0391ebr-m4_A_G8_C9NANNANT00.56 AA08
0401ebr-m5_A_G8_C9AAAAA04170.65 AA04
0411ebr-m1_A_C9_A10AAAAA00420.30 AA00
0421ebr-m2_A_C9_A10AAAAA00360.30 AA00
0431ebr-m3_A_C9_A10AAAAA02130.45 AA02
0441ebr-m4_A_C9_A10AAAAA00510.29 AA00
0451ebr-m5_A_C9_A10AAAAA00190.30 AA00
0461ebr-m1_A_A10_G11AAAAA00800.17 AA00
0471ebr-m2_A_A10_G11AAAAA00790.16 AA00
0481ebr-m3_A_A10_G11AAAAA00810.15 AA00
0491ebr-m4_A_A10_G11AAAAA00810.17 AA00
0501ebr-m5_A_A10_G11AAAAA00790.15 AA00
0511ebr-m1_A_G11_C12AAAAA00840.15 AA00
0521ebr-m2_A_G11_C12AAAAA00780.17 AA00
0531ebr-m3_A_G11_C12AAAAA00880.14 AA00
0541ebr-m4_A_G11_C12AAAAA00790.16 AA00
0551ebr-m5_A_G11_C12AAAAA00840.15 AA00
0561ebr-m1_A_C12_U13AAwAA05510.40 AA05
0571ebr-m2_A_C12_U13AAwAA01390.35 AA01
0581ebr-m3_A_C12_U13AAwAA05500.39 AA05
0591ebr-m4_A_C12_U13AAwAA01770.13 AA01
0601ebr-m5_A_C12_U13AAAAA00140.46 AA00
0611ebr-m1_A_U13_U14NANNANT01.67 OP18
0621ebr-m2_A_U13_U14NANNANT00.74 OP09
0631ebr-m3_A_U13_U14NANNANT00.59 AA05
0641ebr-m4_A_U13_U14NANNANT01.13 OP09
0651ebr-m5_A_U13_U14NANNANT00.41 AA05
0661ebr-m1_A_U14_C15NANNANT01.23 IC04
0671ebr-m2_A_U14_C15NANNANT00.58 OP20
0681ebr-m3_A_U14_C15NANNANT01.30 OP18
0691ebr-m4_A_U14_C15NANNANT00.72 BB16
0701ebr-m5_A_U14_C15NANNANT01.79 OP22
0711ebr-m1_A_C15_G16NANNANT02.08 BB1S
0721ebr-m2_A_C15_G16NANNANT00.87 ZZ2S
0731ebr-m3_A_C15_G16NANNANT01.03 AB02
0741ebr-m4_A_C15_G16NANNANT01.03 AB02
0751ebr-m5_A_C15_G16NANNANT00.68 BA09
0761ebr-m1_A_G16_G17SYNAAS1400.62 AAS1
0771ebr-m2_A_G16_G17NANNANT00.96 AAS1
0781ebr-m3_A_G16_G17SYNAAS1130.76 AAS1
0791ebr-m4_A_G16_G17NANNANT01.00 AAS1
0801ebr-m5_A_G16_G17SYNAAS1110.74 AAS1
0811ebr-m1_A_G17_C18AAAAA00820.15 AA00
0821ebr-m2_A_G17_C18AAAAA00760.15 AA00
0831ebr-m3_A_G17_C18AAAAA00850.13 AA00
0841ebr-m4_A_G17_C18AAAAA00760.17 AA00
0851ebr-m5_A_G17_C18AAAAA00830.14 AA00
0861ebr-m1_A_C18_U19AAAAA00820.14 AA00
0871ebr-m2_A_C18_U19AAAAA00770.14 AA00
0881ebr-m3_A_C18_U19AAAAA00720.21 AA00
0891ebr-m4_A_C18_U19AAAAA00780.16 AA00
0901ebr-m5_A_C18_U19AAAAA00810.16 AA00
0911ebr-m1_A_U19_G20NANNANT00.35 AA08
0921ebr-m2_A_U19_G20AAAAA0280.50 AA02
0931ebr-m3_A_U19_G20AAAAA08240.25 AA08
0941ebr-m4_A_U19_G20NANNANT00.47 AA02
0951ebr-m5_A_U19_G20NANNANT00.42 AA08
0961ebr-m1_A_G20_A21NANNANT01.38 BB07
0971ebr-m2_A_G20_A21NANNANT00.92 BB20
0981ebr-m3_A_G20_A21NANNANT01.56 OP28
0991ebr-m4_A_G20_A21NANNANT02.03 OP18
1001ebr-m5_A_G20_A21NANNANT01.44 AA11
1011ebr-m1_A_A21_C22NANNANT00.71 OP12
1021ebr-m2_A_A21_C22NANNANT01.08 BB00
1031ebr-m3_A_A21_C22NANNANT01.42 AB02
1041ebr-m4_A_A21_C22NANNANT00.89 OP12
1051ebr-m5_A_A21_C22NANNANT01.66 ZZ02
1061ebr-m1_A_C22_G23AAAAA02110.44 AA02
1071ebr-m2_A_C22_G23AAAAA02170.45 AA02
1081ebr-m3_A_C22_G23NANNANT00.52 AA02
1091ebr-m4_A_C22_G23AAAAA02220.54 AA02
1101ebr-m5_A_C22_G23AAAAA02600.33 AA02
1111ebr-m1_A_G23_G24NANNANT01.12 BB2S
1121ebr-m2_A_G23_G24NANNANT01.45 BB2S
1131ebr-m3_A_G23_G24NANNANT01.04 IC04
1141ebr-m4_A_G23_G24NANNANT01.67 ZZ2S
1151ebr-m5_A_G23_G24NANNANT00.91 IC07
1161ebr-m1_A_G24_U25NANNANT01.60 ZZS2
1171ebr-m2_A_G24_U25NANNANT01.13 OP24
1181ebr-m3_A_G24_U25NANNANT01.08 BB03
1191ebr-m4_A_G24_U25NANNANT01.65 ZZS1
1201ebr-m5_A_G24_U25NANNANT01.36 OP24
1211ebr-m1_A_U25_A26NANNANT00.83 OP12
1221ebr-m2_A_U25_A26NANNANT01.06 BA16
1231ebr-m3_A_U25_A26NANNANT01.59 OP24
1241ebr-m4_A_U25_A26NANNANT01.07 OP12
1251ebr-m5_A_U25_A26NANNANT01.40 OP24
1261ebr-m1_A_A26_C27AAAAA00490.19 AA00
1271ebr-m2_A_A26_C27NANNANT00.38 AA04
1281ebr-m3_A_A26_C27AAAAA04150.40 AA04
1291ebr-m4_A_A26_C27NANNANT00.64 AB02
1301ebr-m5_A_A26_C27AAAAA00110.30 AA00
1311ebr-m1_A_C27_A28AAAAA00760.21 AA00
1321ebr-m2_A_C27_A28AAAAA00750.21 AA00
1331ebr-m3_A_C27_A28AAAAA00700.21 AA00
1341ebr-m4_A_C27_A28AAAAA00770.20 AA00
1351ebr-m5_A_C27_A28AAAAA00800.18 AA00
1361ebr-m1_A_A28_C29AAAAA00730.17 AA00
1371ebr-m2_A_A28_C29AAAAA00730.18 AA00
1381ebr-m3_A_A28_C29AAAAA00750.16 AA00
1391ebr-m4_A_A28_C29AAAAA00740.15 AA00
1401ebr-m5_A_A28_C29AAAAA00750.15 AA00
1411ebr-m1_A_C29_C30AAAAA00760.14 AA00
1421ebr-m2_A_C29_C30AAAAA00740.15 AA00
1431ebr-m3_A_C29_C30AAAAA00780.14 AA00
1441ebr-m4_A_C29_C30AAAAA00780.14 AA00
1451ebr-m5_A_C29_C30AAAAA00760.15 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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